File List

Here is a list of all documented files with brief descriptions:

[detail level 12345]

▼ Geometries
► Aerosol
CD_Aerosol.cpp	Implementation of CD_Aerosol.H
CD_Aerosol.H	Declaration of an aerosol geometry
► CoaxialCable
CD_CoaxialCable.cpp	Implementation of CD_CoaxialCable.H
CD_CoaxialCable.H	Coaxial cable geometry
► Cylinder
CD_Cylinder.cpp	Implementation of CD_Cylinder.H
CD_Cylinder.H	Cylinder geometry
► DiskProfiledPlane
CD_DiskProfiledPlane.H
► DoubleRod
CD_DoubleRod.cpp	Implementation of CD_DoubleRod.H
CD_DoubleRod.H	Double rod geometry
► ElectrodeArray
CD_ElectrodeArray.cpp	Implementation of CD_ElectrodeArray.H
CD_ElectrodeArray.H	Electrode array geometry
► MechanicalShaft
CD_MechanicalShaft.cpp	Implementation of CD_MechanicalShaft.H
CD_MechanicalShaft.H	Declaration of a mechanical shaft geometry
► NoisePlane
CD_NoisePlane.cpp	Implementation of CD_NoisePlane.H
CD_NoisePlane.H	Rough sphere geometry
► RandomInterface
CD_RandomInterface.cpp	Implementation of CD_RandomInterface.H
CD_RandomInterface.H	Random interface geometry
► RegularGeometry
CD_RegularGeometry.H	Regular geometry (no EBs)
► RodDielectric
CD_RodDielectric.cpp	Implementation of CD_RodDielectric.H
CD_RodDielectric.H	Definition of a electrode rod and dielectric dielectric geometry
► RodNeedleDisk
CD_RodNeedleDisk.cpp	Implementation of CD_RodNeedleDisk.H
CD_RodNeedleDisk.H	Rod plane electrode geometry, with a needle protruding out of the rod
► RodPlaneProfile
CD_RodPlaneProfile.cpp	Implementation of CD_RodPlaneProfile.H
CD_RodPlaneProfile.H	Rod-plane geometry. The dielectric plane can have surface roughness
► RoughRod
CD_RoughRod.cpp	Implementation of CD_RoughRod.H
CD_RoughRod.H	Rod geometry with surface roughness at tip
► RoughSphere
CD_RoughSphere.cpp	Implementation of CD_RoughSphere.H
CD_RoughSphere.H	Rough sphere geometry
► Tesselation
CD_Tesselation.cpp	Implementation of CD_Tesselation.H
CD_Tesselation.H	Geometry for surface tesselation
► Vessel
CD_Vessel.cpp	High-voltage Vessel geometry
CD_Vessel.H	High-voltage vessel geometry
► WireWire
CD_WireWire.cpp	Implementation of CD_WireWire.H
CD_WireWire.H	Declaration of a Wire-wire geometry
▼ Physics
► AdvectionDiffusion
CD_AdvectionDiffusion.H	Documentation of physics namespace
CD_AdvectionDiffusionSpecies.H	Simple species for AdvectionDiffusion test problem
CD_AdvectionDiffusionStepper.cpp	Implementation of CD_AdvectionDiffusionStepper.H
CD_AdvectionDiffusionStepper.H	TimeStepper class for only solving the the advection-diffusion equation
CD_AdvectionDiffusionTagger.cpp	Implementation of CD_AdvectionDiffusionTagger.H
CD_AdvectionDiffusionTagger.H	Declaration of a cell tagger class for AdvectionDiffusion physics
► BrownianWalker
CD_BrownianWalker.H	Documentation of Physics/BrownianWalker namespace
CD_BrownianWalkerSpecies.cpp	Implementation of CD_BrownianWalkerSpecies.H
CD_BrownianWalkerSpecies.H	Declaration of a Brownian walker species for the ItoSolver
CD_BrownianWalkerStepper.cpp	Implementation of CD_BrownianWalkerStepper.H
CD_BrownianWalkerStepper.H	TimeStepper class for only solving the Brownian_Walker equation (with surface charge)
CD_BrownianWalkerTagger.H	Class for tagging cells across an AMR hierarchy
► CdrPlasma
► CellTaggers
► CdrPlasmaStreamerTagger
CD_CdrPlasmaStreamerTagger.cpp	Implementation CD_CdrPlasmaStreamerTagger.H
CD_CdrPlasmaStreamerTagger.H	Implementation of CellTagger that tags cells based on field evaluations or the Townsend coefficient
► PlasmaModels
► CdrPlasmaJSON
CD_CdrPlasmaJSON.cpp	Implementation of CD_CdrPlasmaJSON.H
CD_CdrPlasmaJSON.H	Declaration of a generic CdrPlasma model
CD_CdrPlasmaPhotoReactionJSON.cpp	Implementation of CD_CdrPlasmaPhotoReactionJSON.H
CD_CdrPlasmaPhotoReactionJSON.H	Declaration of a class that encapsulates reactions for usage with CdrPlasmaJSON
CD_CdrPlasmaReactionJSON.cpp	Implementation of CD_CdrPlasmaReactionJSON.H
CD_CdrPlasmaReactionJSON.H	Declaration of a class that encapsulates reactions for usage with CdrPlasmaJSON
CD_CdrPlasmaSurfaceReactionJSON.cpp	Implementation of CD_CdrPlasmaSurfaceReactionJSON.H
CD_CdrPlasmaSurfaceReactionJSON.H	Declaration of a class that encapsulates reactions for usage with CdrPlasmaJSON
CD_CdrSpeciesJSON.cpp	Implementation of CD_CdrSpeciesJSON.H
CD_CdrSpeciesJSON.H	Declaration of a class that encapsulates a CDR species for use with CdrPlasmaJSON
CD_NeutralSpeciesJSON.cpp	Implementation of CD_NeutralSpeciesJSON.H
CD_NeutralSpeciesJSON.H	Declaration of a class that encapsulates a neutral species for use with CdrPlasmaJSON
CD_RteSpeciesJSON.cpp	Implementation of CD_RteSpeciesJSON.H
CD_RteSpeciesJSON.H	Declaration of a class that encapsulates a RTE species for use with CdrPlasmaJSON
► Timesteppers
► CdrPlasmaGodunovStepper
CD_CdrPlasmaGodunovStepper.cpp	Implementation of CD_CdrPlasmaGodunovStepper.H
CD_CdrPlasmaGodunovStepper.H	Declaration of the Godunov time stepper method
CD_CdrPlasmaGodunovStorage.cpp	Implementation of CdrPlasmaGodunovStepper_storage.H
CD_CdrPlasmaGodunovStorage.H	Declaration of scratch storage for CdrPlasmaGodunovStepper
► CdrPlasmaImExSdcStepper
CD_CdrPlasmaImExSdcStepper.cpp	Implementation of CD_CdrPlasmaImExSdcStepper.H
CD_CdrPlasmaImExSdcStepper.H	Declaration of a semi-implicit spectral deferred correction class for Physics/CdrPlasma
CD_CdrPlasmaImExSdcStorage.cpp	Implementation of CD_CdrPlasmaImExSdcStorage.H
CD_CdrPlasmaImExSdcStorage.H	Declaration of scratch storage for CdrPlasmaImExSdcStepper
CD_CdrPlasma.H	Documentation of physics namespace
CD_CdrPlasmaFieldTagger.cpp	Implementation of CD_CdrPlasmaFieldTagger.H
CD_CdrPlasmaFieldTagger.H	Cell tagger class for Physics/CdrPlasma
CD_CdrPlasmaPhysics.H	Declaration of basic physics coupling functions for Physics/CdrPlasma
CD_CdrPlasmaStepper.cpp	Implementation of CD_CdrPlasmaStepper.H
CD_CdrPlasmaStepper.H	Declaration of a CdrPlasmaStepper, an abstract class for evolving cdr plasma equations in time
CD_CdrPlasmaTagger.cpp	Implementation of CD_CdrPlasmaTagger.H
CD_CdrPlasmaTagger.H	Declearation of an abstract class for tagging cells in a Physics/CdrPlasma context
► DischargeInception
CD_DischargeInceptionSpecies.H	Simple species for DischargeInception test problem
CD_DischargeInceptionStepper.H	TimeStepper class for evaluating the streamer inception criterion
CD_DischargeInceptionStepperImplem.H	Implementation of CD_DischargeInceptionStepper.H
CD_DischargeInceptionTagger.cpp	Implementation of CD_DischargeInceptionTagger.H
CD_DischargeInceptionTagger.H	Cell tagger for DischargeInception module
► Electrostatics
CD_Electrostatics.H	Documentation of Physics/Electrostatics namespace
CD_FieldStepper.cpp	Implementation of CD_FieldStepper.H
CD_FieldStepper.H	TimeStepper class for only solving the Poisson equation (with surface charge)
CD_FieldStepperImplem.H	Implementation of CD_FieldStepper.H
► Geometry
CD_GeometryStepper.cpp	Implementation of CD_GeometryStepper.H
CD_GeometryStepper.H	Declaration of a TimeStepper class without any solver functionality, i.e. for geometries only
► ItoKMC
► CellTaggers
► ItoKMCStreamerTagger
CD_ItoKMCStreamerTagger.H	Implementation ItoKMCTagger which tags on alpha and curvature of field
CD_ItoKMCStreamerTaggerImplem.H	Implementation CD_ItoKMCStreamerTagger.H
► PlasmaModels
► ItoKMCJSON
CD_ItoKMCBackgroundSpecies.H	Declaration of a background species class for usage with ItoKMCJSON
CD_ItoKMCCDRSpecies.H
CD_ItoKMCJSON.cpp	Implementation of CD_ItoKMCJSON.H
CD_ItoKMCJSON.H	Declaration of a ItoKMC plasma model which reads reactions from a JSON file
CD_ItoKMCPhotonSpecies.H	Declaration of a simple PhotonSpecies derived class for usage in ItoKMC
► TimeSteppers
► ItoKMCGodunovStepper
CD_ItoKMCGodunovStepper.H	Declaration of a class which uses a semi-implicit Godunov method for Ito plasma equations
CD_ItoKMCGodunovStepperImplem.H	Implementation of CD_ItoKMCGodunovStepper.H
CD_ItoKMCFieldTagger.H	Declaration of an abstract field-only tagging class for ito plasmas
CD_ItoKMCFieldTaggerImplem.H	Implementation of CD_ItoKMCFieldTagger.H
CD_ItoKMCPhotoReaction.H	Declaration of a class for holding photoionization reaction types in ito_plasma physics
CD_ItoKMCPhotoReactionImplem.H	Implementation of CD_ItoKMCPhotoReaction.H
CD_ItoKMCPhysics.cpp	Implementation of CD_ItoKMCPhysics.H
CD_ItoKMCPhysics.H	Main file for describing Ito-based plasma physics
CD_ItoKMCPhysicsImplem.H	Implementation of CD_ItoKMCPhysics.H
CD_ItoKMCStepper.H	Declaration of an abstract class for integrating the Ito-KMC-Poisson equations
CD_ItoKMCStepperImplem.H	Implementation of CD_ItoKMCStepper.H
CD_ItoKMCSurfaceReaction.H	Declaration of a class that encapsulates a set secondary emission at EBs and domain edges/faces
CD_ItoKMCSurfaceReactionImplem.H	Declaration of a class that encapsulates secondary emission at EBs and domain edges/faces
CD_ItoKMCSurfaceReactions.H	Declaration of a class that encapsulates a set secondary emission at EBs and domain edges/faces
CD_ItoKMCSurfaceReactionSet.H	Declaration of a class that encapsulates a set of secondary emission reactions
CD_ItoKMCSurfaceReactionSetImplem.H	Declaration of a class that encapsulates secondary emission at EBs and domain edges/faces
CD_ItoKMCSurfaceReactionsImplem.H	Implementation of CD_ItoKMCSurfaceReactions.H
CD_ItoKMCTagger.H	Parent tagger class for ItoKMC
CD_ItoKMCTaggerImplem.H	Implementation of CD_ItoKMCTagger.H
► MeshODE
CD_MeshODEStepper.H	Declaration of a TimeStepper implementation for advancing an ODE on a mesh
CD_MeshODEStepperImplem.H	Implementation of CD_MeshODEStepper.H
► RadiativeTransfer
CD_RadiativeTransferSpecies.cpp	Implementation of CD_RadiativeTransferSpecies.H
CD_RadiativeTransferSpecies.H	Simple species for Physics/RadiativeTransfer
CD_RadiativeTransferStepper.H	TimeStepper class for only evolving radiative transfer modules
CD_RadiativeTransferStepperImplem.H	Implementation of CD_RadiativeTransferStepper.H
► TracerParticle
CD_TracerParticlePhysics.H	Documentation of Physics/TracerParticle namespace
CD_TracerParticleStepper.H	Declaration of a TimeStepper implementation for advancing a tracer particle solver
CD_TracerParticleStepperImplem.H	Implementation of CD_TracerParticleStepper.H
CD_Physics.H	Documentation of physics namespace
▼ Source
► AmrMesh
CD_AmrMesh.cpp	Implementation of CD_AmrMesh.H
CD_AmrMesh.H	Declaration of core class for handling AMR-related operations (with embedded boundaries)
CD_AmrMeshImplem.H	Implementation of CD_AmrMesh.H
CD_Average.H	Declaration of averaging methods
CD_BoxLoops.H	Declaration of a namespace for proto-typing grid and EB loops
CD_BoxLoopsImplem.H	Implementation of CD_BoxLoops.H
CD_BoxSorting.H	Declaration of an enum for identifying various ways of sorting grid patches
CD_CellInfo.cpp	Implementation of CD_CellInfo.H
CD_CellInfo.H	Simple class for holding some quantities relevant in a grid cell
CD_CentroidInterpolationStencil.cpp	Implementation of CD_CentroidInterpolationStencil.H
CD_CentroidInterpolationStencil.H	Implementation of IrregStencil that interpolates from cell centers to cell centroids
CD_CoarseInterpQuadCF.cpp	Implementation of CD_CoarseInterpQuadCF.H
CD_CoarseInterpQuadCF.H	Supporting class for doing the coarse-side interpolation for multigrid
CD_CopyStrategy.H	Simple enum for distinguishing copying strategies
CD_DomainFluxIFFAB.cpp	Implementation of CD_DomainFluxIFFAB.H
CD_DomainFluxIFFAB.H	Declaration of a BaseIFFAB wrapper that holds domain fluxes
CD_DomainFluxIFFABFactory.cpp	Implementation of CD_DomainFluxIFFABFactory.H
CD_DomainFluxIFFABFactory.H	Declaration of factory class for DomainFluxIFFAB
CD_EBAddOp.cpp	Implementation of CD_EBAddOp.H
CD_EBAddOp.H	Declaration of a Copier class for making incrementation between LevelData<EBCellFAB> easier
CD_EBAMRData.H	Class for holding data across EBAMR hierarchies
CD_EBAMRDataImplem.H	Implementation of EBAMRData.H
CD_EbCentroidInterpolationStencil.cpp	Implementation of CD_EbCentroidInterpolationStencil.H
CD_EbCentroidInterpolationStencil.H	Declaration of IrregStencil-derived class that can from cell centers to embedded boundary centroids
CD_EBCoarAve.cpp	Implementation of CD_EBCoarAve.H
CD_EBCoarAve.H	Declaration of conservative coarsening utility
CD_EBCoarseToFineInterp.cpp	Implementation of EBCoarseToFineInterp.H
CD_EBCoarseToFineInterp.H	Declaration of an aggregated class for regrid operations
CD_EBFluxRedistribution.cpp	Implementation of CD_EBFluxRedistribution.cpp
CD_EBFluxRedistribution.H	Declaration of a class which can perform redistribution in an EB-AMR context
CD_EBGhostCellInterpolator.cpp	Implementation of CD_EBGhostCellInterpolator.H
CD_EBGhostCellInterpolator.H	Declaration of a class which interpolates ghost cells across the coarse-fine interface
CD_EBGradient.cpp	Implementation of CD_EBGradient.H
CD_EBGradient.H	Declaration of a class which computes gradients in an EBAMR context
CD_EBLeastSquaresMultigridInterpolator.cpp	Implementation of CD_EBLeastSquaresMultigridInterpolator.H
CD_EBLeastSquaresMultigridInterpolator.H	Declaration of a class that can interpolate more ghost cells near the coarse-fine boundary near the EB
CD_EBMGLeastSquaresInterpolator.H
CD_EBMGProlong.cpp	Implementation of CD_EBMGProlong.H
CD_EBMGProlong.H	Declaration of a prolongation operator for EB geometric multigrid
CD_EBMGRestrict.cpp	Implementation of CD_EBMGRestrict.H
CD_EBMGRestrict.H	Declaration of a restriction operator for EB geometric multigrid
CD_EBMultigridInterpolator.cpp	Implementation of CD_EBMultigridInterpolator.H
CD_EBMultigridInterpolator.H	Declaration of a class that can interpolate more ghost cells near the coarse-fine boundary near the EB
CD_EBReflux.cpp	Implementation of CD_EBReflux.H
CD_EBReflux.H	Declaration of a class which can reflux over the coarse-fine interface
CD_IrregAddOp.cpp	Implementation of CD_IrregAddOp.H
CD_IrregAddOp.H	Declaration of a Copier class for making incrementation between LevelData<BaseIVFAB<Real>> easier
CD_IrregAmrStencil.H	Class for holding stencils on irregular over an entire AMR hierarchy
CD_IrregAmrStencilImplem.H	Implementation of CD_IrregAmrStencil.H
CD_IrregStencil.H	Abstract class for holding cut-cell stencils on an AMR level
CD_LevelTiles.cpp	Implementation of CD_LevelTiles.H
CD_LevelTiles.H	Declaration of LevelTiles
CD_LinearStencil.cpp	Implementation of CD_LinearStencil.H
CD_LinearStencil.H	Routines for computing a bi/tri-linear interpolation stencil in cut-cells
CD_LoadBalancing.cpp
CD_LoadBalancing.H	Declaration of a static class for various load balancing operations
CD_LoadBalancingImplem.H
CD_Loads.cpp	Implementation of CD_Loads.H
CD_Loads.H	Declaration of a simple class for holding computational loads
CD_NonConservativeDivergenceStencil.cpp	Implementation of CD_NonConservativeDivergenceStencil.H
CD_NonConservativeDivergenceStencil.H	Implementation of IrregStencil that can perform the nonconservative divergence averaging
CD_PhaseRealm.cpp	Implementation of CD_PhaseRealm.H
CD_PhaseRealm.H	Declaration of the PhaseRealm class
CD_Realm.cpp	Implementation of CD_Realm.H
CD_Realm.H	Declaration of the Realm class
CD_Tile.H
CD_TiledMeshRefine.cpp	Implementation of CD_TiledMeshRefine.H
CD_TiledMeshRefine.H	Header for class TiledMeshRefine
CD_TileImplem.H	Implementation of CD_Tile.H
► CellTagger
CD_CellTagger.cpp	Implementation of CD_CellTagger.H
CD_CellTagger.H	Declaration of a base class for tagging cells across an AMR hierarchy
CD_EBAMRTags.H	Contains an alias declaration of EBAMRTags
► ConvectionDiffusionReaction
CD_CdrCTU.cpp	Implementation of CD_CdrCTU.H
CD_CdrCTU.H	Declaration of a class which implements CdrMultigrid using MUSCL for advection
CD_CdrDomainBC.H	Declaration of domain boundary condition types for CdrSolver
CD_CdrDomainBCImplem.H	Implementation of CD_CdrDomainBC.H
CD_CdrGodunov.cpp	Implementation of CD_CdrGodunov.H
CD_CdrGodunov.H	Declaration of a class which implements CdrMultigrid using Godunov-type advection
CD_CdrIterator.H	Declaration of an iterator class for CdrLayout (for iterating through subsets of solvers)
CD_CdrIteratorImplem.H	Implementation of CdrIterator.H
CD_CdrLayout.H	Declaration of a class that holds a set of CdrSolvers (to cut down on typing)
CD_CdrLayoutImplem.H	Implementation of CD_CdrLayout.H
CD_CdrMultigrid.cpp	Implementation of CD_CdrMultigrid.H
CD_CdrMultigrid.H	Extensions of CdrSolver which use EBHelmholtzOp for diffusion solves
CD_CdrSolver.cpp	Implementation of CD_CdrSolver.H
CD_CdrSolver.H	Declaration of an abstract class for solving scalar convection-diffusion-reaction problems
CD_CdrSpecies.cpp	Implementation of CD_CdrSpecies.H
CD_CdrSpecies.H	Declaration of a class that passes information into CdrSolver (e.g., initial conditions)
► Driver
CD_Driver.cpp	Implementation of CD_Driver.H
CD_Driver.H
CD_TimeCode.H	Declaration of various identifiers for "time codes"
CD_TimeStepper.cpp	Implementation of CD_TimeStepper.H
CD_TimeStepper.H	Declaration of main (abstract) time stepper class
► Electrostatics
CD_EBHelmholtzElectrostaticDomainBC.H
CD_ElectrostaticDomainBc.cpp	Implementation of CD_ElectrostaticDomainBc.H
CD_ElectrostaticDomainBc.H	Declaration of a class for holding function-based boundary conditions on domain edges
CD_ElectrostaticEbBc.cpp	Implementation of CD_ElectrostaticEbBc.H
CD_ElectrostaticEbBc.H	Data holder for holding the voltage at electrodes
CD_FieldSolver.cpp	Implementation of CD_FieldSolver.H
CD_FieldSolver.H	Contains declaration of a base electrostatics solver class
CD_FieldSolverFactory.H	Declaration of a template factory class for making FieldSolvers
CD_FieldSolverFactoryImplem.H	Implementation of CD_FieldSolverFactory.H
CD_FieldSolverImplem.H	Implementation of CD_FieldSolver.H
CD_FieldSolverMultigrid.H	Declaration of FieldSolverMultigrid
CD_MFHelmholtzElectrostaticDomainBCFactory.H
CD_MFHelmholtzElectrostaticEBBC.cpp	Implementation of CD_MFHelmholtzElectrostaticEBBC.H
CD_MFHelmholtzElectrostaticEBBC.H	Declaration of a Electrostatic boundary condition class for MFHelmholtzOp
CD_MFHelmholtzElectrostaticEBBCFactory.cpp	Implementation of CD_MFHelmholtzElectrostaticEBBCFactory.H
CD_MFHelmholtzElectrostaticEBBCFactory.H	Declaration of an electrostatic boundary condition factory class for MFHelmholtzOp
CD_MFHelmholtzElectrostaticEBBCImplem.H	Implementation of CD_MFHelmholtzElectrostaticEBBC.H
CD_MFHelmholtzSaturationChargeJumpBC.cpp	Implementation of CD_MFHelmholtzSaturationChargeJumpBC.H
CD_MFHelmholtzSaturationChargeJumpBC.H	Declaration of an MFHelmholtzJumpBC class which implements the saturation charge boundary condition
CD_MFHelmholtzSaturationChargeJumpBCFactory.H	Declaration of a factory class for making MFHelmholtzSaturationChargeJumpBC objects for multifluid Helmholtz
► Elliptic
CD_EBHelmholtzDirichletDomainBC.H
CD_EBHelmholtzDirichletDomainBCFactory.H
CD_EBHelmholtzDirichletEBBC.H
CD_EBHelmholtzDirichletEBBCFactory.H
CD_EBHelmholtzDomainBC.H
CD_EBHelmholtzDomainBCFactory.H
CD_EBHelmholtzDomainBCImplem.H
CD_EBHelmholtzEBBC.H
CD_EBHelmholtzEBBCFactory.H
CD_EBHelmholtzEBBCImplem.H
CD_EBHelmholtzNeumannDomainBC.H
CD_EBHelmholtzNeumannDomainBCFactory.H
CD_EBHelmholtzNeumannEBBC.H
CD_EBHelmholtzNeumannEBBCFactory.H
CD_EBHelmholtzOp.H	Declaration of Helmholtz multigrid operators
CD_EBHelmholtzOpFactory.cpp	Implementation of CD_EBHelmholtzOpFactory.H
CD_EBHelmholtzOpFactory.H	Declaration of a factory class for making Poisson operators for multigrid
CD_EBHelmholtzRobinDomainBC.H
CD_EBHelmholtzRobinDomainBCFactory.H
CD_EBHelmholtzRobinEBBC.H
CD_EBHelmholtzRobinEBBCFactory.H
CD_MFHelmholtzDirichletDomainBCFactory.H
CD_MFHelmholtzDirichletEBBC.cpp	Implementation of CD_MFHelmholtzDirichletEBBC.H
CD_MFHelmholtzDirichletEBBC.H	Declaration of a Dirichlet boundary condition class for MFHelmholtzOp
CD_MFHelmholtzDirichletEBBCFactory.cpp	Implementation of CD_MFHelmholtzDirichletEBBCFactory.H
CD_MFHelmholtzDirichletEBBCFactory.H	Declaration of a Dirichlet boundary condition factory class for MFHelmholtzOp
CD_MFHelmholtzDomainBCFactory.H
CD_MFHelmholtzEBBC.cpp	Implementation of CD_MFHelmholtzEBBC.H
CD_MFHelmholtzEBBC.H	Declaration of an EB boundary condition class for MFHelmholtzOp
CD_MFHelmholtzEBBCFactory.cpp	Implementation of CD_MFHelmholtzEBBCFactory.H
CD_MFHelmholtzEBBCFactory.H	Declaration of an EB boundary condition factory class for MFHelmholtzOp
CD_MFHelmholtzJumpBC.cpp	Implementation of CD_MFHelmholtzJumpBC.H
CD_MFHelmholtzJumpBC.H	Declaration of class for computing "jump interface" boundary conditions for multifluid Helmholtz code
CD_MFHelmholtzJumpBCFactory.H	Declaration of a factory class for making MFHelmholtzJumpBC objects for use in a multifluid MFHelmholtzOp context
CD_MFHelmholtzJumpBCImplem.H
CD_MFHelmholtzNeumannDomainBCFactory.H
CD_MFHelmholtzNeumannEBBC.H
CD_MFHelmholtzNeumannEBBCFactory.cpp	Implementation of CD_MFHelmholtzNeumannEBBCFactory.H
CD_MFHelmholtzNeumannEBBCFactory.H	Declaration of a Neumann boundary condition factory class for MFHelmholtzOp
CD_MFHelmholtzOp.cpp	Implementation of CD_MFHelmholtzOp.H
CD_MFHelmholtzOp.H	Declaration of a class for solving multiphase Helmholtz equations
CD_MFHelmholtzOpFactory.cpp	Implementation of CD_MFHelmholtzOpFactory.H
CD_MFHelmholtzOpFactory.H	Declaration of a factory class for making multifluid Helmholtz operators for multigrid
CD_MFHelmholtzOpImplem.H	Implementation of CD_MFHelmholtzOp.H
CD_MFHelmholtzRobinDomainBCFactory.H
CD_MFHelmholtzRobinEBBC.H
CD_MFHelmholtzRobinEBBCFactory.cpp	Implementation of CD_MFHelmholtzRobinEBBCFactory.H
CD_MFHelmholtzRobinEBBCFactory.H	Declaration of a Robin boundary condition factory class for MFHelmholtzOp
► Geometry
CD_ComputationalGeometry.cpp	Implementation of CD_ComputationalGeometry.H
CD_ComputationalGeometry.H	Declaration of base class for defining geometries
CD_Dielectric.cpp	Implementation of CD_Dielectric.H
CD_Dielectric.H	Dielectric class
CD_Electrode.cpp	Implementation of CD_Electrode.H
CD_Electrode.H	Declaration of an electrode class
CD_GeoCoarsener.cpp	Implementation of CD_GeoCoarsener.H
CD_GeoCoarsener.H	Declaration of a utility class for removing geometrically tagged cells
CD_ScanShop.H	Declare a class geometry generation (ScanShop) that uses the signed distance function for optimizations
CD_ScanShopImplem.H
► ImplicitFunctions
CD_BoundedNoisePlane.cpp	Declaration of a signed distance function for a noisy plane
CD_BoundedNoisePlane.H	Declaration of a signed distance function for a noisy plane
CD_BoxSdf.cpp	Implements CD_BoxSdf.H
CD_BoxSdf.H	Declare an interface for defining an axis-aligned box
CD_CylinderSdf.cpp	CD_Implementation of CylinderSdf.H
CD_CylinderSdf.H	Declaration of a cylindrical signed distance function
CD_EBGeometryIF.H	Binding of EBGeometry signed distance functions to Chombo objcts
CD_EBGeometryIFImplem.H	Implementation of CD_EBGeometryIF.H
CD_GradedPerlinSphereSdf.cpp	Implementation of CD_GradedPerlinSphereSdf.H
CD_GradedPerlinSphereSdf.H	Declaration of a graded noisy sphere
CD_HollowCylinderIF.cpp	Implementation of CD_HollowCylinderIF.H
CD_HollowCylinderIF.H	Declaration of a hollow cylinder implicit function.
CD_HyperboloidIF.cpp	Implementation CD_HyperboloidIF.H
CD_HyperboloidIF.H	Declaration of a hyperboloid implicit function
CD_HyperboloidOneIF.cpp	Implementation of CD_HyperboloidOneIF.H
CD_HyperboloidOneIF.H	Declaration of a one-sheet hyperboloidal shape
CD_HyperboloidTwoIF.cpp	Implementation of CD_HyperboloidTwoIF.H
CD_HyperboloidTwoIF.H	Declaration of a two-sheet hyperboloidal implicit function object
CD_MushroomIF.cpp	Implementation of CD_MushroomIF.H
CD_MushroomIF.H	Declaration of a "mushroom" implicit function, i.e. a cylinder with a circular flat plate on top
CD_NeedleIF.cpp	Implementation of CD_NeedleIF.H
CD_NeedleIF.H	Declaration of needle electrode (cylinder with one pointy end and one flat end)
CD_NewIntersectionIF.cpp	Implementation of NewIntersectionIF.H
CD_NewIntersectionIF.H	Declaration of a signed distance function which is infinitely far away from everything
CD_PerlinPlaneSdf.cpp	CD_Implementation of CD_PerlinPlaneSdf.H
CD_PerlinPlaneSdf.H	Declaration of a signed distance function for a noisy plane
CD_PerlinRodSdf.H	Declaration of a rod with a rounded, noisy tip
CD_PerlinSdf.cpp	Implementation of CD_PerlinSdf.H
CD_PerlinSdf.H	Declaration of signed distance Perlin noise
CD_PerlinSlabSdf.cpp	Implementation of CD_PerlinSlabSdf.H
CD_PerlinSlabSdf.H	Declaration of a noisy slab, i.e. a box with surface roughness
CD_PerlinSphereSdf.H	Implementation of CD_PerlinSphereSdf.H
CD_PolygonRodIF.cpp	Implementation of CD_PolygonRodIF.H
CD_PolygonRodIF.H	Declaration of a n-sided rod
CD_ProfileCylinderIF.cpp	Implementation of CD_ProfileCylinderIF.H
CD_ProfileCylinderIF.H	Declaration of a cylinder with a surface profile
CD_ProfilePlaneIF.cpp	Implementation of CD_ProfilePlaneIF.H
CD_ProfilePlaneIF.H	Declaration of an implicit function which is a plane with "holes"
CD_RodIF.cpp	Implementation of CD_RodIF.H
CD_RodIF.H	Declaration of a cylinder with spheres at both ends
CD_RoundedBoxIF.cpp	Implementation of CD_RoundedBoxIF.H
CD_RoundedBoxIF.H	Declaration of an implicit function describing a rectangle with rounded corners (and edges in 3D)
CD_RoundedCylinderIF.cpp	Implementation of CD_RoundedCylinderIF.H
CD_RoundedCylinderIF.H	Declaration of a cylindrical implicit function with rounded edges
CD_SignedDistanceBVH.H	Declaration of an signe distance function class that gets its value function from a DCEL surface Tesselation
CD_SignedDistanceBVHImplem.H	Implementation of CD_SignedDistanceBVH.H
CD_SignedDistanceDCEL.H	Declaration of an implicit-function class that gets its value function from a DCEL surface Tesselation
CD_SignedDistanceDCELImplem.H	Implementation of CD_SignedDistanceDCEL.H
CD_SphereArray.cpp	Implementation of CD_SphereArray.H
CD_SphereArray.H	Declaration of a sphere array implicit function
CD_SphereSdf.H	Implementationo CD_SphereSdf.H
CD_TorusSdf.cpp	Implementation of CD_TorusSdf.H
CD_TorusSdf.H	Declaration of a signed distance function for a torus
CD_WedgeIF.cpp	Implementation of CD_WedgeIF.H
CD_WedgeIF.H	Declaration of an implicit function for a wedge
► ItoDiffusion
CD_ItoIterator.H	Declaration of an iterator class for ItoLayout
CD_ItoIteratorImplem.H	Implementation of CD_ItoIterator.H
CD_ItoLayout.H	Declaration of a class that holds a set of ItoSolvers
CD_ItoLayoutImplem.H	Implementation of CD_ItoLayout.H
CD_ItoParticle.H	Declaration of a particle class for Ito diffusion
CD_ItoParticleImplem.H	Implementation of CD_ItoParticle.H
CD_ItoSolver.cpp	Implementation of CD_ItoSolver.H
CD_ItoSolver.H	Declaration of solver class for Ito diffusion
CD_ItoSolverImplem.H	Implementation of CD_ItoSolver.H
CD_ItoSpecies.cpp	Implementation of CD_ItoSpecies.H
CD_ItoSpecies.H	Declaration of an ItoSpecies class that passes in names and initial data to ItoSolvers
CD_SimpleItoParticle.H
CD_SimpleItoParticleImplem.H	Implementation of CD_SimpleItoParticle.H
► KineticMonteCarlo
CD_KMCDualState.H	Declaration of a simple state vector for running Kinetic Monte Carlo for plasma problems
CD_KMCDualStateImplem.H	Implementation of CD_KMCDualState.H
CD_KMCDualStateReaction.H	Declaration of a simple plasma reaction type for Kinetic Monte Carlo
CD_KMCDualStateReactionImplem.H	Implementation of CD_KMCDualStateReaction.H
CD_KMCSingleState.H	Declaration of a simple state vector for running Kinetic Monte Carlo for plasma problems
CD_KMCSingleStateImplem.H	Implementation of CD_KMCSingleState.H
CD_KMCSingleStateReaction.H	Declaration of a simple reaction type for advancing "single states" in Kinetic Monte Carlo codes
CD_KMCSingleStateReactionImplem.H	Implementation of CD_KMCSingleStateReaction.H
CD_KMCSolver.H	Class for running Kinetic Monte Carlo functionality
CD_KMCSolverImplem.H	Implementation of CD_KMCSolver.H
► MeshODESolver
CD_MeshODESolver.H	Encapsulation of an ODE solver on the mesh
CD_MeshODESolverImplem.H	Implementation of CD_MeshODESolver.H
► Multifluid
CD_MFBaseIVFAB.cpp	Implementation of CD_MFBaseIVFAB.H
CD_MFBaseIVFAB.H	Declaration of a multiphase BaseIVFAB<Real>
CD_MFCoarAve.cpp	Implementation of CD_MFCoarAve.H
CD_MFCoarAve.H	Wrapper class for holding multifluid EBCoarAves
CD_MFInterfaceFAB.H	Declaration of a class that allocates irregular data holders over the interface between two phases
CD_MFInterfaceFABImplem.H	Implementation of CD_MFInterfaceFAB.H
CD_MFLevelGrid.cpp	Implementation of CD_MFLevelGrid.H
CD_MFLevelGrid.H	Declaration of a wrapper for wrapping multifluid EBLevelGrids
CD_MFMultigridInterpolator.cpp	Implmementation of CD_MFMultigridInterpolator.H
CD_MFMultigridInterpolator.H	Declaration of a wrapper class for holding multifluid EBMultigridInterpolators
CD_MFReflux.cpp	Implementation of CD_MFReflux.H
CD_MFReflux.H	Declaration of a class for refluxing in a multiphase context
CD_MultifluidAlias.cpp	Implementation of CD_MultifluidAlias.H
CD_MultifluidAlias.H	Declaration of factories that allow aliasing of LevelData<MFFluxFAB> and LevelData<MFBaseIVFAB>
CD_MultiFluidIndexSpace.cpp	Implementation of CD_MultiFluidIndexSpace.H
CD_MultiFluidIndexSpace.H	Multi-fluid index space
► Particle
CD_CoarseFineDeposition.H	Declaration of deposition algorithms in an AMR context
CD_DepositionType.H	Declaration of deposition types
CD_EBAMRParticleMesh.cpp	Implementation of CD_EBAMRParticleMesh.H
CD_EBAMRParticleMesh.H	Declaration of a class for handling particle-mesh operations with AMR
CD_EBAMRParticleMeshImplem.H	Implementation of CD_EBAMRParticleMesh.H
CD_EBAMRSurfaceDeposition.cpp	Implementation of CD_EBAMRSurfaceDeposition.H
CD_EBAMRSurfaceDeposition.H	Declaration of a class for handling surface deposition of particles with EB and AMR
CD_EBAMRSurfaceDepositionImplem.H	Implementation of CD_EBAMRSurfaceDeposition.H
CD_EBCoarseFineParticleMesh.cpp	Implementation of CD_EBCoarseFineParticleMesh.H
CD_EBCoarseFineParticleMesh.H	Declaration of a class for handling particle deposition arithmetics near refinement boundaries
CD_EBIntersection.H	Enum for putting some logic into EB intersection tests
CD_EbIntersection.H	Enum for putting some logic into EB intersection tests
CD_EBParticleMesh.cpp	Implementationof CD_EBParticleMesh.H
CD_EBParticleMesh.H	Declaration of a class for handling particle-mesh interpolation and deposition
CD_EBParticleMeshImplem.H	Implementatoin of CD_EBParticleMesh.H
CD_EBRepresentation.H	Enum for putting some logic into EB intersection tests
CD_GenericParticle.H	Declaration of a generic particle class
CD_GenericParticleImplem.H	Implementation of CD_GenericParticle.H
CD_KDNode.H	Namespace containing various particle management utilities
CD_KDNodeImplem.H	Implementation of CD_KDNode.H
CD_NonCommParticle.H	Declaration of a generic particle class
CD_NonCommParticleImplem.H	Implementation of CD_NonCommParticle.H
CD_ParticleContainer.H	Declaration of a class for holding particles on an AMR hierarchy
CD_ParticleContainerImplem.H	Implementation of CD_ParticleContainer.H
CD_ParticleManagement.H	Namespace containing various particle management utilities
CD_ParticleManagementImplem.H	Implementation of CD_ParticleManagement.H
CD_ParticleOps.H	Declaration of a static class containing some common useful particle routines that would otherwise be replicated across classes
CD_ParticleOpsImplem.H	Implementation of CD_ParticleOps.H
CD_PointParticle.H	Declaration of a computational point particle
CD_PointParticleImplem.H	Implementation of CD_PointParticle.H
► RadiativeTransfer
CD_EBHelmholtzEddingtonSP1DomainBC.H
CD_EBHelmholtzEddingtonSP1DomainBCFactory.H
CD_EBHelmholtzLarsenDomainBC.cpp	Implementation of CD_EBHelmholtzLarsenDomainBC.H
CD_EBHelmholtzLarsenDomainBC.H
CD_EBHelmholtzLarsenDomainBCFactory.cpp	Implementation of CD_EBHelmholtzLarsenDomainBCFactory.H
CD_EBHelmholtzLarsenDomainBCFactory.H	Declaration of a Electrostatic boundary condition class for MFHelmholtzOp
CD_EBHelmholtzLarsenEBBCFactory.cpp	Implementation of CD_EBHelmholtzLarsenEBBCFactory.H
CD_EBHelmholtzLarsenEBBCFactory.H	Declaration of a Electrostatic boundary condition class for MFHelmholtzOp
CD_EddingtonSP1.cpp	Implementation of CD_EddingtonSP1.H
CD_EddingtonSP1.H	Declaration of a first order Eddington solver for radiative transfer
CD_EddingtonSP1DomainBc.cpp	Implementation of CD_EddingtonSP1DomainBc.H
CD_EddingtonSP1DomainBc.H
CD_McPhoto.cpp	Implementation of CD_McPhoto.H
CD_McPhoto.H	Declaration of a radiative transfer solver which uses Monte Carlo sampling of computational or real photons
CD_McPhotoImplem.H	Implementation of CD_McPhoto.H
CD_Photon.H	Declaration of a photon class for particle methods
CD_PhotonImplem.H	Implementation of CD_Photon.H
CD_RtIterator.H	Iterator class for RtLayout
CD_RtIteratorImplem.H	Implementation of RtIterator.H
CD_RtLayout.H	Declaration of a class that holds a set of RtSolvers
CD_RtLayoutImplem.H	Implementation of CD_RtLayout.H
CD_RtSolver.cpp	Implementation of CD_RtSolver.H
CD_RtSolver.H	Abstract parent class for various radiative transfer solvers
CD_RtSpecies.cpp	Implementation of CD_RtSpecies.H
CD_RtSpecies.H	Declaration of a class which supplies a user interface to radiative transfer code
► SurfaceODESolver
CD_SurfaceODESolver.H	Declaration of a cut-cell ODE solver
CD_SurfaceODESolverImplem.H	Implementation of CD_SurfaceODESolver.H
► TracerParticles
CD_TracerParticle.H	Declaration of a tracer particle class
CD_TracerParticleImplem.H	Implementation of CD_TracerParticle.H
CD_TracerParticleSolver.H	Declaration of a solver class that advances tracer particles
CD_TracerParticleSolverImplem.H	Implementation of CD_TracerParticleSolver.H
► Utilities
CD_DataOps.cpp	Implementation of CD_DataOps.H
CD_DataOps.H	Agglomeration of useful data operations
CD_DataOpsImplem.H	Implementation of CD_DataOps.H
CD_DataParser.cpp	Implementation of CD_DataParser.H
CD_DataParser.H	Declaration of various routines for simple parsing of input data
CD_Decorations.H
CD_DischargeIO.cpp	Implementation of DischargeIO.H
CD_DischargeIO.H	Silly, but useful functions that override standard Chombo HDF5 IO
CD_DischargeIOImplem.H	Implementation of CD_DischargeIO.H
CD_LaPackUtils.cpp	Implementation of CD_LaPackUtils.H
CD_LaPackUtils.H	Interface to some LaPack routines
CD_LeastSquares.cpp	Implementation of CD_LeastSquares.H
CD_LeastSquares.H	Agglomeration of various routines that use least squares computations
CD_LeastSquaresImplem.H
CD_Location.H	Declaration of cell positions
CD_LocationImplem.H	Implementation of CD_Location.H
CD_LookupTable.H	Declaration of a table for looking up coefficients etc
CD_LookupTable1D.H	Declaration of a lookup table in one independent variable
CD_LookupTable1DImplem.H
CD_MemoryReport.cpp	Implementation of CD_MemoryReport.H
CD_MemoryReport.H	Headers for utility functions that report memory usage
CD_MultiIndex.cpp	Implementation of CD_MultiIndex.H
CD_MultiIndex.H
CD_NamespaceFooter.H
CD_NamespaceHeader.H
CD_OpenMP.H	Declaration of various useful OpenMP-related utilities
CD_ParallelOps.H	Agglomeration of basic MPI reductions
CD_ParallelOpsImplem.H	Implementation of CD_ParallelOps.H
CD_PolyUtils.cpp	Implementation of CD_PolyUtils.cpp
CD_PolyUtils.H	Agglomeration of some useful algebraic/polynomial routines
CD_Random.cpp	Implementation of CD_Random.H
CD_Random.H	File containing some useful static methods related to random number generation
CD_RandomImplem.H	Implementation of CD_Random.H
CD_RealBox.cpp	Implementation of CD_RealBox.H
CD_RealBox.H	Declaration of an axis-aligned box in space
CD_Timer.H	Implementation of CD_Timer.H
CD_TimerImplem.H	Implementation of CD_Timer.H
CD_Units.H	Declaration of various useful units
CD_VofUtils.cpp	Implementation of CD_VofUtils.H
CD_VofUtils.H	Various functions for getting Vofs near cut-cells