13#ifndef CD_CDRPLASMAGODUNOVSTEPPER_H
14#define CD_CDRPLASMAGODUNOVSTEPPER_H
25#include <CD_NamespaceHeader.H>
102 preRegrid(
int a_lbase,
int a_finestLevel)
override;
112 regrid(
int a_lmin,
int a_oldFinestLevel,
int a_newFinestLevel)
override;
297 RefCountedPtr<CdrStorage>&
305 RefCountedPtr<RtStorage>&
315 regridInternals(
int a_lmin,
int a_oldFinestLevel,
int a_newFinestLevel)
override;
445 floorMass(EBAMRCellData& a_data,
const std::string& a_message,
const RefCountedPtr<CdrSolver>& a_solver)
const;
547 writeCheckpointData(HDF5Handle& a_handle,
int a_lvl)
const override;
558 readCheckpointData(HDF5Handle& a_handle,
int a_lvl)
override;
564#include <CD_NamespaceFooter.H>
Declaration of core class for handling AMR-related operations (with embedded boundaries)
Declaration of an iterator class for CdrLayout (for iterating through subsets of solvers).
Declaration of Physics::CdrPlasma::CdrPlasmaStepper, the abstract base class for CDR plasma time step...
Iterator class for RtLayout.
Implementation of CD_Timer.H.
Iterator class for CdrLayout. This allows iteration through solvers (or subsets of solvers).
Definition CD_CdrIterator.H:28
Utility class for memory handling in CdrPlasmaStepper.
Definition CD_CdrPlasmaGodunovStorage.H:29
Utility class for memory handling in CdrPlasmaStepper.
Definition CD_CdrPlasmaGodunovStorage.H:269
Utility class for memory handling in CdrPlasmaStepper.
Definition CD_CdrPlasmaGodunovStorage.H:375
Utility class for memory handling in CdrPlasmaStepper.
Definition CD_CdrPlasmaGodunovStorage.H:466
CdrPlasmaStepper subclass that advances plasma equations using a split-step Godunov method.
Definition CD_CdrPlasmaGodunovStepper.H:43
void deallocateInternals() override
Deallocate transient memory.
Definition CD_CdrPlasmaGodunovStepper.cpp:698
bool m_debug
Enable for debugging this class.
Definition CD_CdrPlasmaGodunovStepper.H:245
void computeElectricFieldIntoScratch()
Compute electric field into scratch storage.
Definition CD_CdrPlasmaGodunovStepper.cpp:776
EBAMRCellData m_conductivityFactorCell
Used for storing conductivity*dt/eps0 on the cell center.
Definition CD_CdrPlasmaGodunovStepper.H:215
RefCountedPtr< CdrStorage > & getCdrStorage(const CdrIterator< CdrSolver > &a_solverIt)
Function for getting the transient storage associated with a particular CDR solver.
Definition CD_CdrPlasmaGodunovStepper.cpp:295
void regrid(int a_lmin, int a_oldFinestLevel, int a_newFinestLevel) override
Regrid method.
Definition CD_CdrPlasmaGodunovStepper.cpp:416
void extrapolateCdrToEB()
Extrapolate the cell-centered states to the EB.
Definition CD_CdrPlasmaGodunovStepper.cpp:858
DiffusionAlgorithm
Diffusion treatment strategy for the CDR equations.
Definition CD_CdrPlasmaGodunovStepper.H:160
@ Implicit
Implicit (Crank-Nicholson) diffusion for all species.
@ Automatic
Implicit for diffusion-dominated species, explicit otherwise.
bool m_fhd
If true, add a stochastic diffusion flux.
Definition CD_CdrPlasmaGodunovStepper.H:260
FieldCoupling
Coupling strategy between the electric field and charge transport.
Definition CD_CdrPlasmaGodunovStepper.H:141
@ SemiImplicit
Semi-implicit Poisson coupling through the conductivity.
@ Explicit
Solve Poisson explicitly once per time step.
void computeSourceTerms(Real a_dt)
Compute source terms for the CDR and RTE equations.
Definition CD_CdrPlasmaGodunovStepper.cpp:1479
AdvectionSolver m_advectionSolver
Advection solver.
Definition CD_CdrPlasmaGodunovStepper.H:179
Real computeDt() override
Compute the time step – this will be different for the different supported algorithms.
Definition CD_CdrPlasmaGodunovStepper.cpp:1518
void parseOptions() override
Parse startup options.
Definition CD_CdrPlasmaGodunovStepper.cpp:55
void parseField()
Parse the transport algorithm.
Definition CD_CdrPlasmaGodunovStepper.cpp:166
void computeCdrDomainFluxes()
Compute the CDR boundary condition fluxes on the domain faces.
Definition CD_CdrPlasmaGodunovStepper.cpp:1038
std::unique_ptr< Timer > m_timer
Timer for run-time profiling.
Definition CD_CdrPlasmaGodunovStepper.H:184
int m_diffusionOrder
Integration order for diffusion equations.
Definition CD_CdrPlasmaGodunovStepper.H:280
RefCountedPtr< FieldStorage > m_fieldScratch
Scratch storage for the field solver.
Definition CD_CdrPlasmaGodunovStepper.H:199
AdvectionSolver
Advection solver used for the CDR transport step.
Definition CD_CdrPlasmaGodunovStepper.H:150
@ MUSCL
MUSCL-slope-limited upwind advection.
@ Euler
First-order explicit Euler advection.
@ RK2
Second-order Runge-Kutta (Heun) advection.
Real m_implicitDiffusionThreshold
Diffusion threshold factor.
Definition CD_CdrPlasmaGodunovStepper.H:275
FieldCoupling m_fieldCoupling
For figuring out which transport algorithm we use.
Definition CD_CdrPlasmaGodunovStepper.H:169
void floorMass(EBAMRCellData &a_data, const std::string &a_message, const RefCountedPtr< CdrSolver > &a_solver) const
Print how much mass was injected into the system.
Definition CD_CdrPlasmaGodunovStepper.cpp:1661
void extrapolateCdrToDomain()
Extrapolate the CDR cell-centered densities to domain edges/face.
Definition CD_CdrPlasmaGodunovStepper.cpp:992
void advanceTransport(Real a_dt)
Advance the transport problem.
Definition CD_CdrPlasmaGodunovStepper.cpp:1148
void postRegrid() override
Perform post-regrid operations.
Definition CD_CdrPlasmaGodunovStepper.cpp:507
void parseRuntimeOptions() override
Parse run-time adjustable parameters.
Definition CD_CdrPlasmaGodunovStepper.cpp:84
void advanceCdrReactions(Real a_dt)
Advance the reactive problem over a time step dt.
Definition CD_CdrPlasmaGodunovStepper.cpp:1397
DiffusionAlgorithm m_diffusionAlgorithm
For figuring out how we handle diffusion.
Definition CD_CdrPlasmaGodunovStepper.H:174
Vector< RefCountedPtr< RtStorage > > m_rteScratch
Scratch storage for the RTE solvers.
Definition CD_CdrPlasmaGodunovStepper.H:194
bool m_regridSlopes
Regrid slopes or not.
Definition CD_CdrPlasmaGodunovStepper.H:265
void parseFHD()
Parse inclusion of random diffusion flux.
Definition CD_CdrPlasmaGodunovStepper.cpp:255
bool m_extrapAdvect
A special flag for letting the CDR solvers know that we want to compute advective derivatives at half...
Definition CD_CdrPlasmaGodunovStepper.H:240
void postStep()
Perform post-step operations.
Definition CD_CdrPlasmaGodunovStepper.cpp:1690
bool m_filterCompensate
Use compensation step in filter or not.
Definition CD_CdrPlasmaGodunovStepper.H:270
void parseAdvection()
Parse centering for the advective integrator.
Definition CD_CdrPlasmaGodunovStepper.cpp:189
Vector< RefCountedPtr< CdrStorage > > m_cdrScratch
Scratch storage for the CDR solvers.
Definition CD_CdrPlasmaGodunovStepper.H:189
void advanceTransportExplicitField(Real a_dt)
Advance the transport problem using the explicit or explicit-implicit Euler rule.
Definition CD_CdrPlasmaGodunovStepper.cpp:1175
void allocateScratch()
Allocate internal storage.
Definition CD_CdrPlasmaGodunovStepper.cpp:659
EBAMRCellData m_scratchConductivity
Scratch storage for storing m_conductivityFactorCell on the old grids during regrid operations.
Definition CD_CdrPlasmaGodunovStepper.H:235
int m_numFilterRho
Number of filterings for space charge.
Definition CD_CdrPlasmaGodunovStepper.H:285
void parseFloor()
Parse whether or not we should floor the mass.
Definition CD_CdrPlasmaGodunovStepper.cpp:216
void advanceRadiativeTransfer(Real a_dt)
Advance the radiative transfer problem.
Definition CD_CdrPlasmaGodunovStepper.cpp:1435
void regridInternals(int a_lmin, int a_oldFinestLevel, int a_newFinestLevel) override
For regridding internal storage. Does nothing.
Definition CD_CdrPlasmaGodunovStepper.cpp:576
EBAMRFluxData m_conductivityFactorFace
Used for storing conductivity*dt/eps0 on the face centers.
Definition CD_CdrPlasmaGodunovStepper.H:220
void computeSigmaFlux()
Compute the surface flux for the surface charge solver.
Definition CD_CdrPlasmaGodunovStepper.cpp:1118
void deallocateScratch()
Allocate internal storage.
Definition CD_CdrPlasmaGodunovStepper.cpp:740
bool m_floor
True if we floor the CDR densities. Due to reactions/EBs, they are not generally non-negative.
Definition CD_CdrPlasmaGodunovStepper.H:255
void computeCdrDiffusionCoefficients(Real a_time)
Compute CDR diffusion coefficients.
Definition CD_CdrPlasmaGodunovStepper.cpp:1466
void extrapolateWithSourceTerm(Real a_dt)
Extrapolate cell-centered states with the source term.
Definition CD_CdrPlasmaGodunovStepper.cpp:829
Real advance(Real a_dt) override
Implementation of the advance method.
Definition CD_CdrPlasmaGodunovStepper.cpp:307
std::vector< bool > m_useImplicitDiffusion
If true, we are using implicit diffusion. Otherwise it's explicit diffusion.
Definition CD_CdrPlasmaGodunovStepper.H:290
EBAMRIVData m_conductivityFactorEB
Used for storing conductivity*dt/eps0 on the EB centers.
Definition CD_CdrPlasmaGodunovStepper.H:225
bool solveSemiImplicitPoisson()
Solve the semi-implicit Poisson equation.
Definition CD_CdrPlasmaGodunovStepper.cpp:587
void computeCdrFluxesEB()
Compute the CDR boundary condition fluxes on the EBs.
Definition CD_CdrPlasmaGodunovStepper.cpp:915
CdrPlasmaGodunovStepper()=delete
Disallowed constructor – use strong construction.
void parseRegridSlopes()
Parse whether or not to use slopes when regridding.
Definition CD_CdrPlasmaGodunovStepper.cpp:268
void postCheckpointSetup() override
Run post-checkpoint setup operations.
Definition CD_CdrPlasmaGodunovStepper.cpp:524
void parseDiffusion()
Parse how we handle diffusion.
Definition CD_CdrPlasmaGodunovStepper.cpp:121
RefCountedPtr< RtStorage > & getRtStorage(const RtIterator< RtSolver > &a_solverIt)
Function for getting the transient storage associated with a particular RTE solver.
Definition CD_CdrPlasmaGodunovStepper.cpp:301
void parseDebug()
Parse debug mode.
Definition CD_CdrPlasmaGodunovStepper.cpp:229
EBAMRCellData m_scratchSemiImplicitRho
Scratch storage for storing m_semiImplicitRho on the old grids during regrid operations.
Definition CD_CdrPlasmaGodunovStepper.H:230
bool m_profile
Enable performance profiling.
Definition CD_CdrPlasmaGodunovStepper.H:250
void advanceTransportSemiImplicit(Real a_dt)
Advance the transport problem using a semi-implicit formulation for the electric field.
Definition CD_CdrPlasmaGodunovStepper.cpp:1321
void allocateInternals() override
Allocate internal storage.
Definition CD_CdrPlasmaGodunovStepper.cpp:634
void preRegrid(int a_lbase, int a_finestLevel) override
Pre-regrid method. Used for storing important variables for the solvers.
Definition CD_CdrPlasmaGodunovStepper.cpp:389
void parseProfile()
Parse profiling mode.
Definition CD_CdrPlasmaGodunovStepper.cpp:242
RefCountedPtr< SigmaStorage > m_sigmaScratch
Scratch storage for the surface charge solver.
Definition CD_CdrPlasmaGodunovStepper.H:204
void parseFiltering()
Parse filtering settings.
Definition CD_CdrPlasmaGodunovStepper.cpp:281
EBAMRCellData m_semiImplicitRho
Use for holding the "space charge" when doing semi-implicit solves.
Definition CD_CdrPlasmaGodunovStepper.H:210
~CdrPlasmaGodunovStepper() override
Destructor.
Definition CD_CdrPlasmaGodunovStepper.cpp:46
void computeCdrGradients()
Compute gradients of the CDR densities into scratch storage.
Definition CD_CdrPlasmaGodunovStepper.cpp:799
Abstract base class for advancing the coupled CDR plasma equations in time.
Definition CD_CdrPlasmaStepper.H:46
virtual void computeCdrDriftVelocities()
Compute the CDR drift velocities.
Definition CD_CdrPlasmaStepper.cpp:1821
Iterator class for RtLayout.
Definition CD_RtIterator.H:25
Namespace containing physics models for use with chombo-discharge.
Definition CD_AdvectionDiffusion.H:16