Class that holds important things for doing AMR over a specific phase and processor distribution. More...

#include <CD_PhaseRealm.H>

Collaboration diagram for PhaseRealm:

[legend]

Public Member Functions
	PhaseRealm ()
	Default constructor. Must subsequently call define.

	PhaseRealm (const PhaseRealm &a_other)=delete
	Disallowed copy ctor. More...

	PhaseRealm (const PhaseRealm &&a_other)=delete
	Disallowed move ctor. More...

PhaseRealm &	operator= (const PhaseRealm &a_other)=delete
	Disallowed copy assignment operator. More...

PhaseRealm &	operator= (const PhaseRealm &&a_other)=delete
	Disallowed move assignment operator. More...

virtual	~PhaseRealm ()
	Destructor.

void	define (const Vector< DisjointBoxLayout > &a_grids, const Vector< ProblemDomain > &a_domains, const Vector< int > &a_refRat, const Vector< Real > &a_dx, const RealVect a_probLo, const int a_finestLevel, const int a_ebGhost, const int a_numGhost, const int a_lsfGhost, const int a_redistRad, const int a_mgInterpOrder, const int a_mgInterpRadius, const int a_mgInterpWeight, const IrregStencil::StencilType a_centroidStencil, const IrregStencil::StencilType a_ebStencil, const RefCountedPtr< BaseIF > &a_baseif, const RefCountedPtr< EBIndexSpace > &a_ebis)
	Full define function. More...

void	setGrids (const Vector< DisjointBoxLayout > &a_grids, const int a_finestLevel)
	Set grid method. More...

void	preRegrid ()
	Perform pre-regrid operations.

void	regridBase (const int a_lmin)
	Regrid method for EBAMR base. More...

void	regridOperators (const int a_lmin)
	Regrid method for EBAMR operators. More...

void	registerOperator (const std::string a_operator)
	Register an AMR operator. More...

bool	queryOperator (const std::string a_operator) const
	Query if an AMR operator has been registered. More...

const RefCountedPtr< EBIndexSpace > &	getEBIndexSpace () const
	Return the EB index space.

const Vector< int > &	getRefinementRatios () const
	Get refinment ratios. More...

const Vector< Real > &	getDx () const
	Returns resolutions. More...

const Vector< DisjointBoxLayout > &	getGrids () const
	Get AMR grids. More...

const Vector< ProblemDomain > &	getDomains () const
	Get problem domains. More...

const Vector< EBISLayout > &	getEBISLayout () const
	Get EBIS layout. More...

const Vector< RefCountedPtr< EBLevelGrid > > &	getEBLevelGrid () const
	Get EBLevelGrids. More...

const Vector< RefCountedPtr< EBLevelGrid > > &	getEBLevelGridCoFi () const
	Get coarsened fine grids. More...

Vector< RefCountedPtr< LayoutData< VoFIterator > > > &	getVofIterator () const
	Return vof iterator for iterating over irregular cells in each grid patch. More...

const IrregAmrStencil< CentroidInterpolationStencil > &	getCentroidInterpolationStencils () const
	Get stencils for interpolating from cell center to centroids.

const IrregAmrStencil< EbCentroidInterpolationStencil > &	getEbCentroidInterpolationStencilStencils () const
	Get stencils for interpolating from cell center to eb centroids.

const IrregAmrStencil< NonConservativeDivergenceStencil > &	getNonConservativeDivergenceStencils () const
	Get stencils for computing "non-conservative divergences".

const Vector< RefCountedPtr< EBGradient > > &	getGradientOp () const
	Get gradient object.

EBAMRParticleMesh &	getParticleMesh () const
	Get particle-mesh operator.

EBAMRSurfaceDeposition &	getSurfaceDeposition () const
	Get the surface deposition operator.

Vector< RefCountedPtr< EBCoarAve > > &	getCoarseAverage () const
	Get coarsening operators.

Vector< RefCountedPtr< EBCoarseFineParticleMesh > > &	getEBCoarseFineParticleMesh () const
	Get deposition operator.

Vector< RefCountedPtr< EBMultigridInterpolator > > &	getMultigridInterpolator () const
	Get multigrid interpolator.

Vector< RefCountedPtr< EBGhostCellInterpolator > > &	getGhostCellInterpolator () const
	Get ghost cell interpolation utility.

Vector< RefCountedPtr< EBCoarseToFineInterp > > &	getFineInterp () const
	Get piecewise linear ghost cell interpolation utility.

Vector< RefCountedPtr< EBReflux > > &	getFluxRegister () const
	Get flux register utility.

Vector< RefCountedPtr< EBFluxRedistribution > > &	getRedistributionOp () const
	Get the redistribution operators. More...

const EBAMRFAB &	getLevelset () const
	Get level-set function.

Protected Member Functions
void	defineEBLevelGrid (const int a_lmin)
	Define EBLevelGrids. More...

void	defineVofIterator (const int a_lmin)
	Define vof iterators. More...

void	defineEBCoarAve (const int a_lmin)
	Define coarsening utility. More...

void	defineEBMultigrid (const int a_lmin)
	Define multigrid interpolation utility. More...

void	defineFillPatch (const int a_lmin)
	Define regrid utility. More...

void	defineEBCoarseToFineInterp (const int a_lmin)
	Define ghost cell interpolation utility. More...

void	defineMultigridInjection (const int a_lmin)
	Define multigrid injection utility. More...

void	defineFluxReg (const int a_lmin, const int a_regsize)
	Define flux register utility. More...

void	defineRedistOper (const int a_lmin, const int a_regsize)
	Define operator redistribution utility. More...

void	defineFineToCoarRedistOper (const int a_lmin, const int a_regsize)
	Define operator redistribution utility. More...

void	defineCoarToFineRedistOper (const int a_lmin, const int a_regsize)
	Define operator redistribution utility. More...

void	defineCoarToCoarRedistOper (const int a_lmin, const int a_regsize)
	Define operator redistribution utility. More...

void	defineParticleMesh ()
	Define particle mesh operator.

void	defineGradSten (const int a_lmin)
	Define gradient stencils. More...

void	defineIrregSten ()
	Define data recentering stencils. More...

void	defineNonConsDivSten ()
	Define non-conservative divergence stencils. More...

void	defineLevelSet (const int a_lmin, const int a_numGhost)
	Put the level-set on the mesh. More...

Protected Attributes
bool	m_isDefined
	True if things on this phase can be defined. False otherwise. Only used internally.

bool	m_hasEbCf
	Relic of an ancient past. Always true.

bool	m_profile
	Profile or not.

bool	m_verbose
	Verbose or not.

int	m_finestLevel
	Finest grid level.

int	m_numGhostCells
	Number of ghost cells in data holders.

int	m_numEbGhostsCells
	Number of ghost cells in EBLevelGrid/EBISLayout/EBISBox.

int	m_numLsfGhostCells
	Number of ghost cells in level-set function (on the mesh)

int	m_redistributionRadius
	Redistribution radius.

int	m_multigridInterpolationOrder
	Multigrid interpolator order.

int	m_multigridInterpolationRadius
	Multigrid interpolator radius.

int	m_multigridInterpolationWeight
	Multigrid interpolator weight (for least squares)

RealVect	m_probLo
	Lower-left corner of computational domain.

IrregStencil::StencilType	m_centroidStencilType
	Stencil recentering type.

IrregStencil::StencilType	m_ebCentroidStencilType
	Stencil recentering type.

Vector< Real >	m_dx
	Grid resolutions.

Vector< int >	m_refinementRatios
	Refinement ratios between levels.

RefCountedPtr< EBIndexSpace >	m_ebis
	EB index space.

RefCountedPtr< BaseIF >	m_baseif
	Implicit/SD function.

std::map< std::string, bool >	m_operatorMap
	Operator map for checking which ones are registered.

Vector< DisjointBoxLayout >	m_grids
	AMR grids.

Vector< ProblemDomain >	m_domains
	Problem domains.

Vector< EBISLayout >	m_ebisl
	EBIS layouts.

Vector< RefCountedPtr< EBLevelGrid > >	m_eblg
	EB level grids.

Vector< RefCountedPtr< EBLevelGrid > >	m_eblgCoFi
	Coarsened fine-level EB grids. More...

Vector< RefCountedPtr< EBLevelGrid > >	m_eblgFiCo
	Coarsened fine-level EB grids. More...

EBAMRFAB	m_levelset
	Level-set function.

Vector< RefCountedPtr< LayoutData< VoFIterator > > >	m_vofIter
	Cut-cell iterator.

Vector< RefCountedPtr< EBCoarAve > >	m_coarAve
	Coarsening operator.

Vector< RefCountedPtr< EBMultigridInterpolator > >	m_multigridInterpolator
	Multigrid interpolation utility.

Vector< RefCountedPtr< EBGhostCellInterpolator > >	m_ghostCellInterpolator
	Ghost cell interpolation utility.

Vector< RefCountedPtr< EBCoarseToFineInterp > >	m_ebFineInterp
	Regridding utility (for filling new grid patches)

Vector< RefCountedPtr< EBReflux > >	m_ebReflux
	Flux register utility.

Vector< RefCountedPtr< EBFluxRedistribution > >	m_redistributionOp
	Redistribution utilities.

Vector< RefCountedPtr< EBGradient > >	m_gradientOp
	Gradient operator.

EBAMRParticleMesh	m_particleMesh
	For doing particle-mesh operations.

EBAMRSurfaceDeposition	m_surfaceDeposition
	For doing particle deposition onto surfaces.

RefCountedPtr< IrregAmrStencil< CentroidInterpolationStencil > >	m_centroidInterpolationStencil
	Data recentering utility (center to centroid)

RefCountedPtr< IrregAmrStencil< EbCentroidInterpolationStencil > >	m_ebCentroidInterpolationStencil
	Data recentering utility (center to eb centroid)

RefCountedPtr< IrregAmrStencil< NonConservativeDivergenceStencil > >	m_NonConservativeDivergenceStencil
	Stencils for non-conservative divergences.

Detailed Description

Class that holds important things for doing AMR over a specific phase and processor distribution.

This class is essentially an EBAMR core-grid class, containing the usually EBAMR stuff within a single EBIndexSpace. In thus contains a set of grids (DisjointBoxLayout) and the usual EB stuff (EBLevelGrid, EBISLayout). In addition, it contains a bunch of operators that can be registered by the user (through the user interface AmrMesh). These operators live in this class, and they can be fetched e.g. by AmrMesh.

Note: This class is a book-keeping class used by AmrMesh – it is not meant for direct interaction.; To use run-time profiling/debugging, use PhaseRealm.profile=true or PhaseRealm.verbose=true

Constructor & Destructor Documentation

◆ PhaseRealm() [1/2]

PhaseRealm::PhaseRealm ( const PhaseRealm & a_other )

delete

Disallowed copy ctor.

Parameters

[in] a_other Other realm

◆ PhaseRealm() [2/2]

PhaseRealm::PhaseRealm ( const PhaseRealm && a_other )

delete

Disallowed move ctor.

Parameters

[in] a_other Other realm

Member Function Documentation

◆ define()

void PhaseRealm::define	(	const Vector< DisjointBoxLayout > &	a_grids,
		const Vector< ProblemDomain > &	a_domains,
		const Vector< int > &	a_refRat,
		const Vector< Real > &	a_dx,
		const RealVect	a_probLo,
		const int	a_finestLevel,
		const int	a_ebGhost,
		const int	a_numGhost,
		const int	a_lsfGhost,
		const int	a_redistRad,
		const int	a_mgInterpOrder,
		const int	a_mgInterpRadius,
		const int	a_mgInterpWeight,
		const IrregStencil::StencilType	a_centroidStencil,
		const IrregStencil::StencilType	a_ebStencil,
		const RefCountedPtr< BaseIF > &	a_baseif,
		const RefCountedPtr< EBIndexSpace > &	a_ebis
	)

Full define function.

Parameters

[in]	a_grids	Grids on each level, i.e. boxes and processor distributions
[in]	a_domains	Problem domains
[in]	a_refRat	Refinement ratios
[in]	a_dx	Grid resolutions
[in]	a_probLo	Lower-left corner of physical domain
[in]	a_finestLevel	Finest grid level
[in]	a_ebGhost	Number of ghost cells used for geometric information when making operators
[in]	a_numGhost	Number of ghost cells in data holders
[in]	a_lsfGhost	Number of ghost cells used when computing the level set on the mesh
[in]	a_redistRad	Redistribution radius
[in]	a_mgInterpOrder	Multigrid ghost cell interpolation order
[in]	a_mgInterpRadius	Multigrid ghost cell interpolation radius
[in]	a_mgInterpWeight	Multigrid ghost cell interpolation weight (for least squares)
[in]	a_centroidStencil	Stencil type for interpolation from cell centers to cell centroids
[in]	a_ebStencil	Stencil type for interpolation from cell centers to eb centroids
[in]	a_baseif	Implicit/signed distance function
[in]	a_ebis	EBIndexSpace discrete information

◆ defineCoarToCoarRedistOper()

void PhaseRealm::defineCoarToCoarRedistOper	(	const int	a_lmin,
		const int	a_regsize
	)

protected

Define operator redistribution utility.

Parameters