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chombo-discharge
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Class for handling spatial operations. More...
#include <CD_AmrMesh.H>
Public Member Functions | |
| AmrMesh () | |
| Default constructor. | |
| AmrMesh (const AmrMesh &a_other)=delete | |
| Disallowed copy constructor. More... | |
| AmrMesh (const AmrMesh &&a_other)=delete | |
| Disallowed move constructor. More... | |
| virtual | ~AmrMesh () |
| Destructor. | |
| AmrMesh & | operator= (const AmrMesh &a_other)=delete |
| Disallowed copy assignment. More... | |
| AmrMesh & | operator= (const AmrMesh &&a_other)=delete |
| Disallowed move assignment. More... | |
| template<typename T > | |
| void | copyData (EBAMRData< T > &a_dst, const EBAMRData< T > &a_src, const CopyStrategy &a_toRegion=CopyStrategy::Valid, const CopyStrategy &a_fromRegion=CopyStrategy::Valid) const noexcept |
| Method for copying from a source container to a destination container. User supplies information about from/to regions. More... | |
| template<typename T > | |
| void | copyData (EBAMRData< T > &a_dst, const EBAMRData< T > &a_src, const Interval &a_dstComps, const Interval &a_srcComps, const CopyStrategy &a_toRegion=CopyStrategy::Valid, const CopyStrategy &a_fromRegion=CopyStrategy::Valid) const noexcept |
| Method for copying from a source container to a destination container. User supplies information. More... | |
| template<typename T > | |
| void | copyData (LevelData< T > &a_dst, const LevelData< T > &a_src, const int a_level, const std::string a_toRealm, const std::string a_fromRealm, const CopyStrategy &a_toRegion=CopyStrategy::Valid, const CopyStrategy &a_fromRegion=CopyStrategy::Valid) const noexcept |
| Method for copying from a source container to a destination container. User supplies information about from/to regions. More... | |
| template<typename T > | |
| void | copyData (LevelData< T > &a_dst, const LevelData< T > &a_src, const int a_level, const std::string a_toRealm, const std::string a_fromRealm, const Interval &a_dstComps, const Interval &a_srcComps, const CopyStrategy &a_toRegion=CopyStrategy::Valid, const CopyStrategy &a_fromRegion=CopyStrategy::Valid) const noexcept |
| Method for copying from a source container to a destination container. User supplies information about from/to regions. More... | |
| template<typename T > | |
| void | deallocate (Vector< T * > &a_data) const |
| Deallocate data. More... | |
| template<typename T > | |
| void | deallocate (Vector< RefCountedPtr< T >> &a_data) const |
| Deallocate smart pointer data. More... | |
| template<typename T > | |
| void | deallocate (EBAMRData< T > &a_data) const |
| Deallocate data. More... | |
| template<typename T > | |
| void | alias (Vector< T * > &a_alias, const Vector< RefCountedPtr< T >> &a_data) const |
| Turn smart-pointer data structure into regular-pointer data structure. More... | |
| template<typename T , typename S > | |
| void | alias (Vector< T * > &a_alias, const EBAMRData< S > &a_data) const |
| Turn smart-pointer data structure into regular-pointer data structure. More... | |
| template<typename T > | |
| void | allocate (Vector< RefCountedPtr< ParticleData< T >>> &a_particles, const std::string a_realm) const |
| Template class for generic allocation of particle data. More... | |
| template<typename T > | |
| void | allocate (ParticleContainer< T > &a_container, const std::string a_realm) const |
| Template class for generic allocation of particle containers. More... | |
| template<typename T > | |
| void | allocatePointer (Vector< RefCountedPtr< T >> &a_data) const |
| Allocate pointer but not any memory blocks. More... | |
| template<typename T > | |
| void | allocatePointer (Vector< RefCountedPtr< T >> &a_data, const int a_finestLevel) const |
| Allocate pointer but not any memory blocks. More... | |
| template<typename T > | |
| void | allocatePointer (EBAMRData< T > &a_data, const std::string a_realm) const |
| Allocate pointer but not any memory blocks. More... | |
| template<typename T > | |
| void | allocatePointer (EBAMRData< T > &a_data, const std::string a_realm, const int a_finestLevel) const |
| Allocate pointer but not any memory. More... | |
| EBAMRCellData | slice (EBAMRCellData &a_original, const Interval a_variables) const noexcept |
| Slice cell-centered data in order to fetch a subset of components. More... | |
| const EBAMRCellData | slice (const EBAMRCellData &a_original, const Interval a_variables) const noexcept |
| Slice cell-centered data in order to fetch a subset of components. More... | |
| void | parseOptions () |
| Parse options. Called during the constructor. | |
| void | parseRuntimeOptions () |
| Parse runtime options. More... | |
| void | registerOperator (const std::string a_operator, const std::string a_realm, const phase::which_phase a_phase) |
| Register an operator over a realm and a phase. More... | |
| void | registerMask (const std::string a_mask, const int a_buffer, const std::string a_realm) |
| Register a boolean mask over a realm. More... | |
| void | buildDomains () |
| Build domains. | |
| void | setFinestLevel (const int a_finestLevel) |
| Set the finest level. More... | |
| void | setCoarsestGrid (const IntVect &a_nCells) |
| Set the coarsest grid cells. | |
| bool | queryRealm (const std::string a_realm) const |
| Query if a realm exists. More... | |
| bool | getEbCf () const |
| Check if mesh has an EBCF. More... | |
| void | registerRealm (const std::string a_realm) |
| Register a new realm. More... | |
| void | alias (EBAMRCellData &a_data, const phase::which_phase a_phase, const MFAMRCellData &a_mfdata, const int a_finestLevel) const |
| Alias multifluid data up to a specified level. More... | |
| void | alias (EBAMRFluxData &a_data, const phase::which_phase a_phase, const MFAMRFluxData &a_mfdata, const int a_finestLevel) const |
| Alias multifluid data up to a specified level. More... | |
| void | alias (EBAMRCellData &a_data, const phase::which_phase a_phase, const MFAMRCellData &a_mfdata) const |
| Alias an entire hiearchy of multifluid data. More... | |
| void | alias (EBAMRFluxData &a_data, const phase::which_phase a_phase, const MFAMRFluxData &a_mfdata) const |
| Alias an entire hiearchy of multifluid data. More... | |
| void | alias (EBAMRIVData &a_data, const phase::which_phase a_phase, const MFAMRIVData &a_mfdata) const |
| Alias an entire hiearchy of multifluid data. More... | |
| EBAMRCellData | alias (const phase::which_phase a_phase, const MFAMRCellData &a_mfdata) const |
| Alias an entire hiearchy of multifluid data. More... | |
| EBAMRFluxData | alias (const phase::which_phase a_phase, const MFAMRFluxData &a_mfdata) const |
| Alias an entire hiearchy of multifluid data. More... | |
| EBAMRIVData | alias (const phase::which_phase a_phase, const MFAMRIVData &a_mfdata) const |
| Alias an entire hiearchy of multifluid data. More... | |
| void | computeGradient (EBAMRCellData &a_gradient, const EBAMRCellData &a_phi, const std::string a_realm, const phase::which_phase a_phase) const |
| Compute cell-centered gradient over an AMR hierarchy. More... | |
| void | computeGradient (EBAMRFluxData &a_gradient, const EBAMRCellData &a_phi, const std::string a_realm, const phase::which_phase a_phase) const |
| Compute face-centered gradient over an AMR hierarchy. More... | |
| void | computeGradient (MFAMRCellData &a_gradient, const MFAMRCellData &a_phi, const std::string a_realm) const |
| Compute cell-centered gradient over an AMR hierarchy. More... | |
| void | computeGradient (MFAMRFluxData &a_gradient, const MFAMRCellData &a_phi, const std::string a_realm) const |
| Compute face-centered gradient over an AMR hierarchy. More... | |
| void | allocate (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase, const int a_nComp, const int a_nGhost=-1) const |
| Allocate a data holder over a specific realm. More... | |
| void | allocate (LevelData< EBCellFAB > &a_data, const std::string a_realm, const phase::which_phase a_phase, const int a_level, const int a_nComp, const int a_nGhost=-1) const |
| Allocate data on specific level. More... | |
| void | allocate (EBAMRFluxData &a_data, const std::string a_realm, const phase::which_phase a_phase, const int a_nComp, const int a_nGhost=-1) const |
| Allocate a data holder over a specific realm. More... | |
| void | allocate (EBAMRIVData &a_data, const std::string a_realm, const phase::which_phase a_phase, const int a_nComp, const int a_nGhost=-1) const |
| Allocate a data holder over a specific realm. More... | |
| void | allocate (EBAMRIFData &a_data, const std::string a_realm, const phase::which_phase a_phase, const int a_nComp, const int a_nGhost=-1) const |
| Allocate a data holder over a specific realm. More... | |
| void | allocate (EBAMRBool &a_data, const std::string a_realm, const int a_nComp, const int a_nGhost=-1) const |
| Allocate Boolean data over a specific realm. More... | |
| void | allocate (MFAMRCellData &a_data, const std::string a_realm, const int a_nComp, const int a_nGhost=-1) const |
| Allocate a data holder over a specific realm. More... | |
| void | allocate (MFAMRFluxData &a_data, const std::string a_realm, const int a_nComp, const int a_ghost=-1) const |
| Allocate a data holder over a specific realm. More... | |
| void | allocate (MFAMRIVData &a_data, const std::string a_realm, const int a_nComp, const int a_ghost=0) const |
| Allocate a data holder over a specific realm. More... | |
| void | reallocate (EBAMRCellData &a_data, const phase::which_phase a_phase, const int a_lmin) const |
| Reallocate data. More... | |
| void | reallocate (EBAMRFluxData &a_data, const phase::which_phase a_phase, const int a_lmin) const |
| Reallocate data. More... | |
| void | reallocate (EBAMRIVData &a_data, const phase::which_phase a_phase, const int a_lmin) const |
| Reallocate data. More... | |
| void | reallocate (EBAMRIFData &a_data, const phase::which_phase a_phase, const int a_lmin) const |
| Reallocate data. More... | |
| void | reallocate (EBAMRBool &a_data, const int a_lmin) const |
| Reallocate data. More... | |
| void | reallocate (MFAMRCellData &a_data, const int a_lmin) const |
| Reallocate data. More... | |
| void | reallocate (MFAMRFluxData &a_data, const int a_lmin) const |
| Reallocate data. More... | |
| void | reallocate (MFAMRIVData &a_data, const int a_lmin) const |
| Reallocate data. More... | |
| void | average (MFAMRCellData &a_data, const std::string a_realm, const Average &a_average) const |
| Average multifluid data over a specified realm. More... | |
| void | arithmeticAverage (MFAMRCellData &a_data, const std::string a_realm) const |
| Arithmetic coarsening of multifluid data. More... | |
| void | harmonicAverage (MFAMRCellData &a_data, const std::string a_realm) const |
| Harmonic coarsening of multifluid data. More... | |
| void | conservativeAverage (MFAMRCellData &a_data, const std::string a_realm) const |
| Conservative coarsening of multifluid data. More... | |
| void | average (MFAMRFluxData &a_data, const std::string a_realm, const Average &a_average) const |
| Average multifluid data over a specified realm. More... | |
| void | arithmeticAverage (MFAMRFluxData &a_data, const std::string a_realm) const |
| Average multifluid data over a realm. More... | |
| void | harmonicAverage (MFAMRFluxData &a_data, const std::string a_realm) const |
| Average multifluid data over a realm. More... | |
| void | conservativeAverage (MFAMRFluxData &a_data, const std::string a_realm) const |
| Average down multifluid data over a realm. More... | |
| void | average (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase, const Average &a_average) const |
| Average down on specific realm and phase. More... | |
| void | average (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase, const Average &a_average, const Interval &a_variables) const |
| Average down on specific realm and phase. More... | |
| void | arithmeticAverage (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Arithmetic average of data. Does all components. More... | |
| void | arithmeticAverage (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase, const Interval &a_variables) const |
| Arithmetic average of data. More... | |
| void | harmonicAverage (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Harmonic average of data. Does all components. More... | |
| void | harmonicAverage (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase, const Interval &a_variables) const |
| Harmonic average of data. Does all components. More... | |
| void | conservativeAverage (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Conseratively average data. Does all components. More... | |
| void | conservativeAverage (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase, const Interval &a_variables) const |
| Conseratively average data. Does all components. More... | |
| void | average (EBAMRFluxData &a_data, const std::string a_realm, const phase::which_phase a_phase, const Average &a_average) const |
| Average down on specific realm and phase. More... | |
| void | arithmeticAverage (EBAMRFluxData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Average down on specific realm and phase. More... | |
| void | harmonicAverage (EBAMRFluxData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Average down on specific realm and phase. More... | |
| void | conservativeAverage (EBAMRFluxData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Average down on specific realm and phase. More... | |
| void | average (EBAMRIVData &a_data, const std::string a_realm, const phase::which_phase a_phase, const Average &a_average) const |
| Average down on specific realm and phase. More... | |
| void | arithmeticAverage (EBAMRIVData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Arithmetic average on specific realm and phase. More... | |
| void | harmonicAverage (EBAMRIVData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Harmonic average on specific realm and phase. More... | |
| void | conservativeAverage (EBAMRIVData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Conservative averaging on specific realm and phase. More... | |
| template<class P , const Real &(P::*)() const particleScalarField> | |
| void | depositParticles (EBAMRCellData &a_meshData, const std::string &a_realm, const phase::which_phase &a_phase, const ParticleContainer< P > &a_particles, const DepositionType a_depositionType, const CoarseFineDeposition a_coarseFineDeposition, const bool a_forceIrregNGP=false) |
| Deposit scalar particle quantities on the mesh. More... | |
| template<class P , Real(P::*)() const particleScalarField> | |
| void | depositParticles (EBAMRCellData &a_meshData, const std::string &a_realm, const phase::which_phase &a_phase, const ParticleContainer< P > &a_particles, const DepositionType a_depositionType, const CoarseFineDeposition a_coarseFineDeposition, const bool a_forceIrregNGP=false) |
| Deposit scalar particle quantities on the mesh. More... | |
| template<class P , const RealVect &(P::*)() const particleVectorField> | |
| void | depositParticles (EBAMRCellData &a_meshData, const std::string &a_realm, const phase::which_phase &a_phase, const ParticleContainer< P > &a_particles, const DepositionType a_depositionType, const CoarseFineDeposition a_coarseFineDeposition, const bool a_forceIrregNGP=false) |
| Deposit vector particle quantities on the mesh. More... | |
| template<class P , RealVect(P::*)() const particleVectorField> | |
| void | depositParticles (EBAMRCellData &a_meshData, const std::string &a_realm, const phase::which_phase &a_phase, const ParticleContainer< P > &a_particles, const DepositionType a_depositionType, const CoarseFineDeposition a_coarseFineDeposition, const bool a_forceIrregNGP=false) |
| Deposit vector particle quantities on the mesh. More... | |
| template<class P , const Real &(P::*)() const particleScalarField> | |
| void | depositParticles (EBAMRIVData &a_meshData, const std::string &a_realm, const phase::which_phase &a_phase, const ParticleContainer< P > &a_particles) const noexcept |
| Deposit scalar particle quantities on the mesh. More... | |
| template<class P , Real(P::*)() const particleScalarField> | |
| void | depositParticles (EBAMRIVData &a_meshData, const std::string &a_realm, const phase::which_phase &a_phase, const ParticleContainer< P > &a_particles) const noexcept |
| Deposit scalar particle quantities on the mesh. More... | |
| template<class P , Real &(P::*)() particleScalarField> | |
| void | interpolateParticles (ParticleContainer< P > &a_particles, const std::string &a_realm, const phase::which_phase &a_phase, const EBAMRCellData &a_meshScalarField, const DepositionType a_interpType, const bool a_forceIrregNGP=false) const |
| Interpolate a scalar field onto the particle position. More... | |
| template<class P , RealVect &(P::*)() particleVectorField> | |
| void | interpolateParticles (ParticleContainer< P > &a_particles, const std::string &a_realm, const phase::which_phase &a_phase, const EBAMRCellData &a_meshVectorField, const DepositionType a_interpType, const bool a_forceIrregNGP=false) const |
| Interpolate a vector field onto the particle position. More... | |
| template<class P > | |
| void | removeCoveredParticlesIF (ParticleContainer< P > &a_particles, const phase::which_phase &a_phase, const Real a_tolerance=0.0) const |
| Function which removes particles from the domain if they fall inside the EB. More... | |
| template<class P > | |
| void | removeCoveredParticlesDiscrete (ParticleContainer< P > &a_particles, const phase::which_phase &a_phase, const Real a_tolerance=0.0) const |
| Function which removes particles from the domain if they fall inside the EB. More... | |
| template<class P > | |
| void | removeCoveredParticlesVoxels (ParticleContainer< P > &a_particles, const phase::which_phase &a_phase) const |
| Function which removes particles from the domain if they fall inside the EB. More... | |
| template<class P > | |
| void | transferCoveredParticlesIF (ParticleContainer< P > &a_particlesFrom, ParticleContainer< P > &a_particlesTo, const phase::which_phase &a_phase, const Real a_tolerance=0.0) const |
| Function which transferse particles from one particle container to another if they fall inside the EB. More... | |
| template<class P > | |
| void | transferCoveredParticlesDiscrete (ParticleContainer< P > &a_particlesFrom, ParticleContainer< P > &a_particlesTo, const phase::which_phase &a_phase, const Real a_tolerance=0.0) const |
| Function which transferse particles from one particle container to another if they fall inside the EB. More... | |
| template<class P > | |
| void | transferCoveredParticlesVoxels (ParticleContainer< P > &a_particlesFrom, ParticleContainer< P > &a_particlesTo, const phase::which_phase &a_phase) const |
| Function which transferse particles from one particle container to another if they fall inside the EB. More... | |
| template<class P > | |
| void | transferIrregularParticles (ParticleContainer< P > &a_dstParticles, ParticleContainer< P > &a_srcParticles, const phase::which_phase a_phase, const std::function< void(P &)> a_transferModifier=[](P &) -> void { return;}) const noexcept |
| Transfer particles that are on the wrong side of the EB to a different container. More... | |
| template<class P > | |
| void | intersectParticlesRaycastIF (ParticleContainer< P > &a_activeParticles, ParticleContainer< P > &a_ebParticles, ParticleContainer< P > &a_domainParticles, const phase::which_phase a_phase, const Real a_tolerance, const bool a_deleteParticles, const std::function< void(P &)> a_nonDeletionModifier=[](P &) -> void { return;}) const noexcept |
| Particle intersection algorithm based on ray-casting. More... | |
| template<class P > | |
| void | intersectParticlesBisectIF (ParticleContainer< P > &a_activeParticles, ParticleContainer< P > &a_ebParticles, ParticleContainer< P > &a_domainParticles, const phase::which_phase a_phase, const Real a_bisectionStep, const bool a_deleteParticles, const std::function< void(P &)> a_nonDeletionModifier=[](P &) -> void { return;}) const noexcept |
| Particle intersection algorithm based on bisection. More... | |
| void | interpGhost (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Interpolate ghost vectors over a realm, using the default ghost cell interpolation method. More... | |
| void | interpGhost (LevelData< EBCellFAB > &a_fineData, const LevelData< EBCellFAB > &a_coarData, const int a_level, const std::string a_realm, const phase::which_phase a_phase) const |
| Interpolate ghost cells over a realm, using the default ghost cell interpolation method on a specific level. More... | |
| void | interpGhost (MFAMRCellData &a_data, const std::string a_realm) const |
| Interpolate ghost cells over a realm. Calls the default ghost cell interpolation method. More... | |
| void | interpGhostPwl (MFAMRCellData &a_data, const std::string a_realm) const |
| Interpolate ghost cells over a realm and phase. This uses piecewise linear interpolation (with limiters) More... | |
| void | interpGhostPwl (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Interpolate ghost cells over a realm and phase. This uses piecewise linear interpolation (with limiters) More... | |
| void | interpGhostMG (MFAMRCellData &a_data, const std::string a_realm) const |
| Interpolate ghost cells over a realm and phase. More... | |
| void | interpGhostMG (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Interpolate ghost cells over a realm and phase. More... | |
| void | interpToNewGrids (MFAMRCellData &a_newData, const MFAMRCellData &a_oldData, const int a_lmin, const int a_oldFinestLevel, const int a_newFinestLevel, const EBCoarseToFineInterp::Type a_type) |
| Interpolate data to new grids. More... | |
| void | interpToNewGrids (EBAMRCellData &a_newData, const EBAMRCellData &a_oldData, const phase::which_phase a_phase, const int a_lmin, const int a_oldFinestLevel, const int a_newFinestLevel, const EBCoarseToFineInterp::Type a_type) |
| Interpolate data to new grids. More... | |
| void | interpToNewGrids (EBAMRIVData &a_newData, const EBAMRIVData &a_oldData, const phase::which_phase a_phase, const int a_lmin, const int a_oldFinestLevel, const int a_newFinestLevel, const EBCoarseToFineInterp::Type a_type) |
| Interpolate data to new grids. More... | |
| template<class P > | |
| void | remapToNewGrids (ParticleContainer< P > &a_particles, const int a_lmin, const int a_newFinestLevel) const noexcept |
| Regrid particle to new grids. More... | |
| void | interpToCentroids (EBAMRCellData &a_data, const std::string a_realm, const phase::which_phase a_phase) const |
| Interpolate data to centroids on realm and phase. More... | |
| void | interpToCentroids (LevelData< EBCellFAB > &a_data, const std::string a_realm, const phase::which_phase a_phase, const int a_level) const |
| Interpolate data to centroids. More... | |
| void | setMultifluidIndexSpace (const RefCountedPtr< MultiFluidIndexSpace > &a_multiFluidIndexSpace) |
| Sets multifluid index space. More... | |
| void | setBaseImplicitFunction (const phase::which_phase a_phase, const RefCountedPtr< BaseIF > &a_baseIF) |
| Set implicit function for a specific phase. Need e.g. for level-sets. More... | |
| void | preRegrid () |
| Run pre-regrid operations. | |
| void | regridAmr (const Vector< IntVectSet > &a_tags, const int a_lmin, const int a_hardcap=-1) |
| Regrid AMR. This versions generates the grids and Realms, but not the operator. More... | |
| void | regridRealm (const std::string a_realm, const Vector< Vector< int >> &a_procs, const Vector< Vector< Box >> &a_boxes, const int a_lmin) |
| Regrid a realm. This generates the grids for the realm, but does not do the operators on the realm. More... | |
| void | postRegrid () |
| Run post-regrid operations. | |
| void | setGrids (const Vector< Vector< Box >> &a_boxes, const std::map< std::string, Vector< Vector< long int >>> &a_realmsAndLoads) |
| Set grids from boxes and computational loads. More... | |
| void | regridOperators (const int a_lmin) |
| Regrid AMR operators. This is done for all realms. More... | |
| void | regridOperators (const std::string a_realm, const int a_lmin) |
| Regrid AMR operators. This is done for a specific realm. More... | |
| void | sanityCheck () const |
| Do a sanity check to make sure everything is set up correctly. | |
| int | getFinestLevel () const |
| Get finest grid level. | |
| int | getMaxAmrDepth () const |
| Get maximum permitted amr depth. | |
| int | getMaxSimulationDepth () const |
| Get maximum permitted simulation depth. | |
| int | getBlockingFactor () const |
| Get blocking factor (i.e. the smallest possible box). | |
| int | getMaxBoxSize () const |
| Get maximum permitted box size. | |
| int | getBrBuffer () const |
| Return buffer for B-R mesh refinement algorithm. | |
| int | getMaxEbisBoxSize () const |
| Get maximum box size for EBIS generation. | |
| int | getNumberOfGhostCells () const |
| Get the default number of ghost cells. | |
| int | getNumberOfEbGhostCells () const |
| Get number of ghost cells used for EB grid generation. | |
| int | getRedistributionRadius () const |
| Get default redistribution radius. | |
| Real | getFinestDx () const |
| Get resolution on the finest grid level. | |
| RealVect | getProbLo () const |
| Get lower-left corner of computational domain. | |
| RealVect | getProbHi () const |
| Get upper-left corner of computational domain. | |
| ProblemDomain | getFinestDomain () const |
| Get finest domain. | |
| const Vector< Real > & | getDx () const |
| Get spatial resolutions. | |
| const Vector< int > & | getRefinementRatios () const |
| Get refinement ratios. | |
| int | getRefinementRatio (const int a_level1, const int a_level2) const |
| Get refinement factor between two levels. More... | |
| const RefCountedPtr< BaseIF > & | getBaseImplicitFunction (const phase::which_phase a_phase) const |
| Get implicit function for a specific phase. More... | |
| const Vector< DisjointBoxLayout > & | getProxyGrids () const |
| Get the "proxy" grids in AmrMesh. More... | |
| const Vector< DisjointBoxLayout > & | getGrids (const std::string a_realm) const |
| Get the grids. | |
| const Vector< ProblemDomain > & | getDomains () const |
| Get domains. | |
| const AMRMask & | getMask (const std::string a_mask, const int a_buffer, const std::string a_realm) const |
| Get a registered mask. More... | |
| const AMRMask & | getValidCells (const std::string a_realm) const |
| Get a map of all valid cells on a specified realm. More... | |
| const Vector< RefCountedPtr< LevelTiles > > & | getLevelTiles (const std::string a_realm) const |
| Get the tiled space representation. More... | |
| const Vector< RefCountedPtr< EBLevelGrid > > & | getEBLevelGrid (const std::string a_realm, const phase::which_phase a_phase) const |
| Get the EBLevelGrid for a Realm and phase. More... | |
| const Vector< RefCountedPtr< EBLevelGrid > > & | getEBLevelGridCoFi (const std::string a_realm, const phase::which_phase a_phase) const |
| Get the coarsened fine EBLevelGrid for a Realm and phase. More... | |
| const Vector< EBISLayout > & | getEBISLayout (const std::string a_realm, const phase::which_phase a_phase) const |
| Get EBISLayouts for a Realm and phase. More... | |
| const Vector< RefCountedPtr< MFLevelGrid > > & | getMFLevelGrid (const std::string a_realm) const |
| Get EBISLayouts for a Realm. More... | |
| Vector< RefCountedPtr< LayoutData< VoFIterator > > > & | getVofIterator (const std::string a_realm, const phase::which_phase a_phase) const |
| Get vof iterators for a Realm and phase. This has the capability of iterating through cut-cells. More... | |
| const EBAMRFAB & | getLevelset (const std::string a_realm, const phase::which_phase a_phase) const |
| Get levelset function, allocated over a grid for a Realm and phase. More... | |
| EBAMRParticleMesh & | getParticleMesh (const std::string a_realm, const phase::which_phase a_phase) const |
| Get EBAMRParticleMesh operator. More... | |
| EBAMRSurfaceDeposition & | getSurfaceDeposition (const std::string a_realm, const phase::which_phase a_phase) const |
| Get EBAMRSurfaceDeposition surface deposition operator. More... | |
| Vector< RefCountedPtr< EBCoarAve > > & | getCoarseAverage (const std::string a_realm, const phase::which_phase a_phase) const |
| Get the coarsening utility. | |
| Vector< RefCountedPtr< EBMultigridInterpolator > > & | getMultigridInterpolator (const std::string a_realm, const phase::which_phase a_phase) const |
| Get multigrid interpolation utility. More... | |
| Vector< RefCountedPtr< EBCoarseToFineInterp > > & | getFineInterp (const std::string a_realm, const phase::which_phase a_phase) const |
| Get interpolator. More... | |
| Vector< RefCountedPtr< EBReflux > > & | getFluxRegister (const std::string a_realm, const phase::which_phase a_phase) const |
| Get flux register. More... | |
| Vector< RefCountedPtr< EBFluxRedistribution > > & | getRedistributionOp (const std::string a_realm, const phase::which_phase a_phase) const |
| Get the redistribution operators. More... | |
| const IrregAmrStencil< CentroidInterpolationStencil > & | getCentroidInterpolationStencils (const std::string a_realm, const phase::which_phase a_phase) const |
| Get interpolation stencils for going from cell center to cell centroid. More... | |
| const IrregAmrStencil< EbCentroidInterpolationStencil > & | getEbCentroidInterpolationStencils (const std::string a_realm, const phase::which_phase a_phase) const |
| Get interpolation stencils for going from cell center to cell boundary centroid. More... | |
| const IrregAmrStencil< NonConservativeDivergenceStencil > & | getNonConservativeDivergenceStencils (const std::string a_realm, const phase::which_phase a_phase) const |
| Get the nonconservative divergence stencils. More... | |
| std::vector< std::string > | getRealms () const |
| Get the name of all Realms. More... | |
| BoxSorting | getBoxSorting () const |
| Get box sorting method. More... | |
| RefCountedPtr< EBIndexSpace > & | getEBIndexSpace (const phase::which_phase a_phase) |
| Get EBIndexSpace corresponding to a particular phase. More... | |
Protected Types | |
| enum class | GridGenerationMethod { BergerRigoutsous , Tiled } |
| Enum for having understandable notation for grid generation. | |
Protected Member Functions | |
| void | defineRealms () |
| Define Realms. | |
| void | buildGrids (const Vector< IntVectSet > &a_tags, const int a_lmin, const int a_hardcap=-1) |
| Build new internal AMR grids. More... | |
| void | buildCopiers () |
| Build copiers for copying between realms. | |
| void | parseProbLoHiCorners () |
| Parse the low/high corners of the computational domain. | |
| void | parseGridGeneration () |
| Parse the grid generation algorithm. | |
| void | parseVerbosity () |
| Parse the verbosity for AmrMesh. | |
| void | parseCoarsestLevelNumCells () |
| Parse the coarsest domain grid. | |
| void | parseMaxAmrDepth () |
| Parse the maximum permitted AMR depth. | |
| void | parseMaxSimulationDepth () |
| Set maximum simulation depth. | |
| void | parseRefinementRatios () |
| Parse refinement ratios. | |
| void | parseBrBufferSize () |
| Parse buffer size for Berger-Rigoutsous grid algorithm. | |
| void | parseBrFillRatio () |
| Parse the Berger-Rigoutsos fill ratio. | |
| void | parseMaxBoxSize () |
| Parse the maximum permitted box size. | |
| void | parseMaxEbisBoxSize () |
| Parse the maximum permitted box size. More... | |
| void | parseBlockingFactor () |
| Parse the B-R blocking factor. For tiled mesh refinement this parses the tile size. | |
| void | parseEbGhostCells () |
| Parse number of ghost cells for eb stuff. More... | |
| void | parseNumGhostCells () |
| Parse the number of ghost cells. | |
| void | parseMultigridInterpolator () |
| Parse settings for the multigrid interpolator. | |
| void | parseRedistributionRadius () |
| Parse the default redistribution radius. | |
| void | parseCentroidStencils () |
| Parse centroid interpolation stencils. | |
| void | parseEbCentroidStencils () |
| Parse EB interpolation (or extrapolation) stencils. | |
| void | computeGradient (LevelData< EBCellFAB > &a_gradient, const LevelData< EBCellFAB > &a_phi, const std::string a_realm, const phase::which_phase a_phase, const int a_lvl) const |
| Compute cell-centered gradient for a grid level. More... | |
Protected Attributes | |
| std::map< std::string, RefCountedPtr< Realm > > | m_realms |
| These are all the Realms. | |
| std::map< phase::which_phase, RefCountedPtr< BaseIF > > | m_baseif |
| Implicit functions. | |
| std::map< std::string, Vector< DisjointBoxLayout > > | m_oldGrids |
| Old grids. | |
| std::map< std::string, Vector< Copier > > | m_oldToNewCellCopiers |
| Storage for copiers from the old grids to the new ones. More... | |
| std::map< std::string, Vector< Copier > > | m_oldToNewEBCopiers |
| Storage for copiers from the old grids to the new ones. More... | |
| std::map< std::pair< std::string, std::string >, Vector< Copier > > | m_validToValidRealmCopiers |
| Map for copying between various Realms. First index is the "from" realm and second index is the "to" realm. More... | |
| std::map< std::pair< std::string, std::string >, Vector< Copier > > | m_validToValidGhostRealmCopiers |
| Map for copying between various Realms. First index is the "from" realm and second index is the "to" realm. More... | |
| std::map< std::pair< std::string, std::string >, Vector< Copier > > | m_validGhostToValidRealmCopiers |
| Map for copying between various Realms. First index is the "from" realm and second index is the "to" realm. More... | |
| std::map< std::pair< std::string, std::string >, Vector< Copier > > | m_validGhostToValidGhostRealmCopiers |
| Map for copying between various Realms. First index is the "from" realm and second index is the "to" realm. More... | |
| GridGenerationMethod | m_gridGenerationMethod |
| Grid generation method. | |
| BoxSorting | m_boxSort |
| Box sorting. | |
| RefCountedPtr< MultiFluidIndexSpace > | m_multifluidIndexSpace |
| MultiFluidIndexSpace. | |
| IrregStencil::StencilType | m_stencilType |
| Stencil type. | |
| IrregStencil::StencilType | m_centroidStencilType |
| Stencil type for centroid interpolation. | |
| IrregStencil::StencilType | m_ebCentroidStencilType |
| Stencil type for EB interpolation. | |
| IntVect | m_numCells |
| Coarsest box where we compute. | |
| Real | m_fillRatioBR |
| Fill ratio. | |
| RealVect | m_probLo |
| Domain simulation corner. | |
| RealVect | m_probHi |
| Domain simulation corner. | |
| int | m_refRatio |
| Refinement ratio. | |
| int | m_verbosity |
| Verbosity. | |
| int | m_finestLevel |
| Finest level. | |
| int | m_oldFinestLevel |
| Finest level before a regrid. | |
| int | m_maxAmrDepth |
| Maximum amr depth. | |
| int | m_maxSimulationDepth |
| Maximum allowed depth for simulation. | |
| int | m_maxBoxSize |
| Max box size. | |
| int | m_maxEbisBoxSize |
| Maximum box size for EBIS generation. | |
| int | m_bufferSizeBR |
| Set buffer size. | |
| int | m_blockingFactor |
| Blocking factor. | |
| int | m_numEbGhostsCells |
| Number of ghost cells to use for eb stuff. | |
| int | m_numGhostCells |
| Number of ghost cells. | |
| int | m_numLsfGhostCells |
| Number of ghost cells to use when writing level-set to grid. | |
| int | m_multigridInterpOrder |
| Multigrid interpolation order. | |
| int | m_multigridInterpRadius |
| Multigrid interpolation radius. | |
| int | m_multigridInterpWeight |
| Multigrid interpolation weights. | |
| int | m_redistributionRadius |
| Redistribution radius. | |
| int | m_centroidStencilOrder |
| Order for interpolation stencils to centroids. | |
| int | m_centroidStencilRadius |
| Radius for centroid interpolation stencil. | |
| int | m_ebCentroidStencilOrder |
| Order for interpolation stencilst to EB. | |
| int | m_ebCentroidStencilRadius |
| Radius for EB interpolation stencil. | |
| int | m_irregStenOrder |
| Stencil order for irregular stencils. | |
| int | m_irregStenRadius |
| radius for irregular stencils | |
| bool | m_hasGrids |
| Has grids or not. | |
| bool | m_hasRegridCopiers |
| Has regrid copiers or not. | |
| Vector< DisjointBoxLayout > | m_grids |
| Grids. | |
| Vector< ProblemDomain > | m_domains |
| Problem domains. | |
| Vector< int > | m_refinementRatios |
| AMR resolutions. | |
| Vector< Real > | m_dx |
| Level resolutions. | |
Class for handling spatial operations.
This class handles most (if not all) spatial operations. Examples are grid generation, coarsening of data, interpolation of data, memory allocations etc.
|
delete |
Disallowed copy constructor.
| [in] | a_other | Other AmrMesh |
|
delete |
Disallowed move constructor.
| [in] | a_other | Other AmrMesh |
| EBAMRCellData AmrMesh::alias | ( | const phase::which_phase | a_phase, |
| const MFAMRCellData & | a_mfdata | ||
| ) | const |
Alias an entire hiearchy of multifluid data.
| [in] | a_phase | Phase (gas or solid). |
| [in] | a_mfdata | Multifluid data to be aliased |
| EBAMRFluxData AmrMesh::alias | ( | const phase::which_phase | a_phase, |
| const MFAMRFluxData & | a_mfdata | ||
| ) | const |
Alias an entire hiearchy of multifluid data.
| [in] | a_phase | Phase (gas or solid). |
| [in] | a_mfdata | Multifluid data to be aliased |
| EBAMRIVData AmrMesh::alias | ( | const phase::which_phase | a_phase, |
| const MFAMRIVData & | a_mfdata | ||
| ) | const |
Alias an entire hiearchy of multifluid data.
| [in] | a_phase | Phase (gas or solid). |
| [in] | a_mfdata | Multifluid data to be aliased |
| void AmrMesh::alias | ( | EBAMRCellData & | a_data, |
| const phase::which_phase | a_phase, | ||
| const MFAMRCellData & | a_mfdata | ||
| ) | const |
Alias an entire hiearchy of multifluid data.
| [out] | a_data | Single-phased data on specific phase |
| [in] | a_phase | Phase (gas or solid). |
| [in] | a_mfdata | Multifluid data to be aliased |
| void AmrMesh::alias | ( | EBAMRCellData & | a_data, |
| const phase::which_phase | a_phase, | ||
| const MFAMRCellData & | a_mfdata, | ||
| const int | a_finestLevel | ||
| ) | const |
Alias multifluid data up to a specified level.
| [out] | a_data | Single-phased data on specific phase |
| [in] | a_phase | Phase (gas or solid). |
| [in] | a_mfdata | Multifluid data to be aliased |
| [in] | a_finestLevel | Maximum grid level for aliasing operation. |
| void AmrMesh::alias | ( | EBAMRFluxData & | a_data, |
| const phase::which_phase | a_phase, | ||
| const MFAMRFluxData & | a_mfdata | ||
| ) | const |
Alias an entire hiearchy of multifluid data.
| [out] | a_data | Single-phased data on specific phase |
| [in] | a_phase | Phase (gas or solid). |
| [in] | a_mfdata | Multifluid data to be aliased |
| void AmrMesh::alias | ( | EBAMRFluxData & | a_data, |
| const phase::which_phase | a_phase, | ||
| const MFAMRFluxData & | a_mfdata, | ||
| const int | a_finestLevel | ||
| ) | const |
Alias multifluid data up to a specified level.
| [out] | a_data | Single-phased data on specific phase |
| [in] | a_phase | Phase (gas or solid). |
| [in] | a_mfdata | Multifluid data to be aliased |
| [in] | a_finestLevel | Maximum grid level for aliasing operation. |
| void AmrMesh::alias | ( | EBAMRIVData & | a_data, |
| const phase::which_phase | a_phase, | ||
| const MFAMRIVData & | a_mfdata | ||
| ) | const |
Alias an entire hiearchy of multifluid data.
| [out] | a_data | Single-phased data on specific phase |
| [in] | a_phase | Phase (gas or solid). |
| [in] | a_mfdata | Multifluid data to be aliased |
| void AmrMesh::alias | ( | Vector< T * > & | a_alias, |
| const EBAMRData< S > & | a_data | ||
| ) | const |
Turn smart-pointer data structure into regular-pointer data structure.
| [out] | a_alias | Raw pointer aliased |
| [in] | a_data | Smart-pointer data |
This fetches the bare pointer from a_data and sets it in a_alias.
| void AmrMesh::alias | ( | Vector< T * > & | a_alias, |
| const Vector< RefCountedPtr< T >> & | a_data | ||
| ) | const |
Turn smart-pointer data structure into regular-pointer data structure.
| [out] | a_alias | Raw pointer aliased |
| [in] | a_data | Smart-pointer data |
This fetches the bare pointer from a_data and sets it in a_alias.
| void AmrMesh::allocate | ( | EBAMRBool & | a_data, |
| const std::string | a_realm, | ||
| const int | a_nComp, | ||
| const int | a_nGhost = -1 |
||
| ) | const |
Allocate Boolean data over a specific realm.
| [out] | a_data | Data holder to be allocated |
| [in] | a_realm | Realm of the name where the data will be allocated. |
| [in] | a_nComp | Number of components in a_data |
| [in] | a_nGhost | Number of ghost cells for a_data |
| void AmrMesh::allocate | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const int | a_nComp, | ||
| const int | a_nGhost = -1 |
||
| ) | const |
Allocate a data holder over a specific realm.
| [out] | a_data | Data holder to be allocated |
| [in] | a_realm | Realm of the name where the data will be allocated. |
| [in] | a_phase | Phase (gas or solid) |
| [in] | a_nComp | Number of components in a_data |
| [in] | a_nGhost | Number of ghost cells for a_data |
| void AmrMesh::allocate | ( | EBAMRFluxData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const int | a_nComp, | ||
| const int | a_nGhost = -1 |
||
| ) | const |
Allocate a data holder over a specific realm.
| [out] | a_data | Data holder to be allocated |
| [in] | a_realm | Realm of the name where the data will be allocated. |
| [in] | a_phase | Phase (gas or solid) |
| [in] | a_nComp | Number of components in a_data |
| [in] | a_nGhost | Number of ghost cells for a_data |
| void AmrMesh::allocate | ( | EBAMRIFData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const int | a_nComp, | ||
| const int | a_nGhost = -1 |
||
| ) | const |
Allocate a data holder over a specific realm.
| [out] | a_data | Data holder to be allocated |
| [in] | a_realm | Realm of the name where the data will be allocated. |
| [in] | a_nComp | Number of components in a_data |
| [in] | a_nGhost | Number of ghost cells for a_data |
| void AmrMesh::allocate | ( | EBAMRIVData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const int | a_nComp, | ||
| const int | a_nGhost = -1 |
||
| ) | const |
Allocate a data holder over a specific realm.
| [out] | a_data | Data holder to be allocated |
| [in] | a_realm | Realm of the name where the data will be allocated. |
| [in] | a_phase | Phase (gas or solid) |
| [in] | a_nComp | Number of components in a_data |
| [in] | a_nGhost | Number of ghost cells for a_data |
| void AmrMesh::allocate | ( | LevelData< EBCellFAB > & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const int | a_level, | ||
| const int | a_nComp, | ||
| const int | a_nGhost = -1 |
||
| ) | const |
Allocate data on specific level.
| [out] | a_data | Data holder to be allocated |
| [in] | a_realm | Realm of the name where the data will be allocated. |
| [in] | a_phase | Phase (gas or solid) |
| [in] | a_level | AMR level |
| [in] | a_nComp | Number of components in a_data |
| [in] | a_nGhost | Number of ghost cells for a_data |
| void AmrMesh::allocate | ( | MFAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const int | a_nComp, | ||
| const int | a_nGhost = -1 |
||
| ) | const |
Allocate a data holder over a specific realm.
| [out] | a_data | Data holder to be allocated |
| [in] | a_realm | Realm of the name where the data will be allocated. |
| [in] | a_nComp | Number of components in a_data |
| [in] | a_nGhost | Number of ghost cells for a_data |
| void AmrMesh::allocate | ( | MFAMRFluxData & | a_data, |
| const std::string | a_realm, | ||
| const int | a_nComp, | ||
| const int | a_ghost = -1 |
||
| ) | const |
Allocate a data holder over a specific realm.
| [out] | a_data | Data holder to be allocated |
| [in] | a_realm | Realm of the name where the data will be allocated. |
| [in] | a_nComp | Number of components in a_data |
| [in] | a_nGhost | Number of ghost cells for a_data |
| void AmrMesh::allocate | ( | MFAMRIVData & | a_data, |
| const std::string | a_realm, | ||
| const int | a_nComp, | ||
| const int | a_ghost = 0 |
||
| ) | const |
Allocate a data holder over a specific realm.
| [out] | a_data | Data holder to be allocated |
| [in] | a_realm | Realm of the name where the data will be allocated. |
| [in] | a_nComp | Number of components in a_data |
| [in] | a_nGhost | Number of ghost cells for a_data |
| void AmrMesh::allocate | ( | ParticleContainer< T > & | a_container, |
| const std::string | a_realm | ||
| ) | const |
Template class for generic allocation of particle containers.
| [out] | a_container | Particle container to be allocated |
| [out] | a_realm | Realm on which the particles will be allocated. |
| void AmrMesh::allocate | ( | Vector< RefCountedPtr< ParticleData< T >>> & | a_particles, |
| const std::string | a_realm | ||
| ) | const |
Template class for generic allocation of particle data.
| [out] | a_particles | Particle data holder. |
| [out] | a_realm | Realm on which the particles will be allocated. |
| void AmrMesh::allocatePointer | ( | EBAMRData< T > & | a_data, |
| const std::string | a_realm | ||
| ) | const |
Allocate pointer but not any memory blocks.
| [out] | a_data | Data structure for which pointers will be constructed. |
| [in] | a_realm | Realm associated with the data |
This sets all the elements in a_data to be RefCountedPtr<T>(nullptr)
| void AmrMesh::allocatePointer | ( | EBAMRData< T > & | a_data, |
| const std::string | a_realm, | ||
| const int | a_finestLevel | ||
| ) | const |
Allocate pointer but not any memory.
| [out] | a_data | Data structure for which pointers will be constructed. |
| [in] | a_realm | Realm associated with the data |
| [in] | a_finestLevel | Finest grid level on which a_data will be defined. |
This sets all the elements in the vector to be RefCountedPtr<T>(nullptr)
| void AmrMesh::allocatePointer | ( | Vector< RefCountedPtr< T >> & | a_data | ) | const |
Allocate pointer but not any memory blocks.
| [out] | a_data | Data structure for which pointers will be constructed. |
This sets all the elements in the vector to be RefCountedPtr<T>(nullptr)
| void AmrMesh::allocatePointer | ( | Vector< RefCountedPtr< T >> & | a_data, |
| const int | a_finestLevel | ||
| ) | const |
Allocate pointer but not any memory blocks.
| [out] | a_data | Data structure for which pointers will be constructed. |
| [in] | a_finestLevel | Finest grid level on which a_data will be defined. |
This sets all the elements in the vector to be RefCountedPtr<T>(nullptr)
| void AmrMesh::arithmeticAverage | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Arithmetic average of data. Does all components.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::arithmeticAverage | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const Interval & | a_variables | ||
| ) | const |
Arithmetic average of data.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| [in] | a_variables | Variables |
| void AmrMesh::arithmeticAverage | ( | EBAMRFluxData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Average down on specific realm and phase.
This computes an arithmetic average of the face data. Data on coarse faces is replaced by the arithmetic average of the fine face data.
| [in,out] | a_data | Data to be average. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::arithmeticAverage | ( | EBAMRIVData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Arithmetic average on specific realm and phase.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::arithmeticAverage | ( | MFAMRCellData & | a_data, |
| const std::string | a_realm | ||
| ) | const |
Arithmetic coarsening of multifluid data.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| void AmrMesh::arithmeticAverage | ( | MFAMRFluxData & | a_data, |
| const std::string | a_realm | ||
| ) | const |
Average multifluid data over a realm.
This computes an arithmetic average of the face data. Data on coarse faces is replaced by the arithmetic average of the fine face data.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| void AmrMesh::average | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const Average & | a_average | ||
| ) | const |
Average down on specific realm and phase.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| [in] | a_average | Averaging method |
| void AmrMesh::average | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const Average & | a_average, | ||
| const Interval & | a_variables | ||
| ) | const |
Average down on specific realm and phase.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm |
| [in] | a_phase | Phase (gas or solid) |
| [in] | a_variables | Variables to average |
| [in] | a_average | Averaging method |
| void AmrMesh::average | ( | EBAMRFluxData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const Average & | a_average | ||
| ) | const |
Average down on specific realm and phase.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| [in] | a_average | Averaging method |
| void AmrMesh::average | ( | EBAMRIVData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const Average & | a_average | ||
| ) | const |
Average down on specific realm and phase.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| [in] | a_average | Averaging method |
| void AmrMesh::average | ( | MFAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const Average & | a_average | ||
| ) | const |
Average multifluid data over a specified realm.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_average | Averaging method |
| void AmrMesh::average | ( | MFAMRFluxData & | a_data, |
| const std::string | a_realm, | ||
| const Average & | a_average | ||
| ) | const |
Average multifluid data over a specified realm.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_average | Averaging method |
|
protected |
Build new internal AMR grids.
| [in,out] | a_tags | Sets of cell tags used for the grid generation. |
| [in] | a_lmin | The finest grid level which changes. |
| [in] | a_hardcap | Hardcap for the maximum grid level which can be generated. If a_hardcap < 0 there is no restriction beyond the AmrMesh restrictions. |
This will call the specified grid generation method and fill m_grids with the new grids.
| void AmrMesh::computeGradient | ( | EBAMRCellData & | a_gradient, |
| const EBAMRCellData & | a_phi, | ||
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Compute cell-centered gradient over an AMR hierarchy.
| [out] | a_gradient | Cell centered gradient. |
| [in] | a_phi | The scalar for which the gradient is computed. |
| [in] | a_realm | Name of the realm where the data lives. |
| [in] | a_phase | Phase on which the data lives. |
| void AmrMesh::computeGradient | ( | EBAMRFluxData & | a_gradient, |
| const EBAMRCellData & | a_phi, | ||
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Compute face-centered gradient over an AMR hierarchy.
| [out] | a_gradient | Face centered gradient. |
| [in] | a_phi | The scalar for which the gradient is computed. |
| [in] | a_realm | Name of the realm where the data lives. |
| [in] | a_phase | Phase on which the data lives. |
|
protected |
Compute cell-centered gradient for a grid level.
| [out] | a_gradient | Cell centered gradient. |
| [in] | a_phi | The scalar for which the gradient is computed. |
| [in] | a_realm | Name of the realm where the data lives. |
| [in] | a_phase | Phase on which the data lives. |
| [in] | a_lvl | Grid level where the data lives. |
| void AmrMesh::computeGradient | ( | MFAMRCellData & | a_gradient, |
| const MFAMRCellData & | a_phi, | ||
| const std::string | a_realm | ||
| ) | const |
Compute cell-centered gradient over an AMR hierarchy.
| [out] | a_gradient | Cell centered gradient. |
| [in] | a_phi | The scalar for which the gradient is computed. |
| [in] | a_realm | Name of the Realm where the data lives. |
| void AmrMesh::computeGradient | ( | MFAMRFluxData & | a_gradient, |
| const MFAMRCellData & | a_phi, | ||
| const std::string | a_realm | ||
| ) | const |
Compute face-centered gradient over an AMR hierarchy.
| [out] | a_gradient | Face centered gradient. |
| [in] | a_phi | The scalar for which the gradient is computed. |
| [in] | a_realm | Name of the Realm where the data lives. |
| void AmrMesh::conservativeAverage | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Conseratively average data. Does all components.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::conservativeAverage | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const Interval & | a_variables | ||
| ) | const |
Conseratively average data. Does all components.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| [in] | a_variables | Variables |
| void AmrMesh::conservativeAverage | ( | EBAMRFluxData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Average down on specific realm and phase.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::conservativeAverage | ( | EBAMRIVData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Conservative averaging on specific realm and phase.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::conservativeAverage | ( | MFAMRCellData & | a_data, |
| const std::string | a_realm | ||
| ) | const |
Conservative coarsening of multifluid data.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| void AmrMesh::conservativeAverage | ( | MFAMRFluxData & | a_data, |
| const std::string | a_realm | ||
| ) | const |
Average down multifluid data over a realm.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
|
noexcept |
Method for copying from a source container to a destination container. User supplies information about from/to regions.
| [in,out] | a_dst | Destination data |
| [in] | a_src | Source data |
| [in] | a_toRegion | Region we copy into |
| [in] | a_fromRegion | Region we copy from |
|
noexcept |
Method for copying from a source container to a destination container. User supplies information.
| [in,out] | a_dst | Destination data |
| [in] | a_src | Source data |
| [in] | a_dstComps | Destination components |
| [in] | a_srcComps | Source components |
| [in] | a_toRegion | Region we copy into |
| [in] | a_fromRegion | Region we copy from |
|
noexcept |
Method for copying from a source container to a destination container. User supplies information about from/to regions.
| [in,out] | a_dst | Destination data |
| [in] | a_src | Source data |
| [in] | a_level | Grid level |
| [in] | a_toRealm | Destination realm |
| [in] | a_fromRealm | Source realm |
| [in] | a_fromRegion | Region we copy from |
| [in] | a_toRegion | Region we copy into |
|
noexcept |
Method for copying from a source container to a destination container. User supplies information about from/to regions.
| [in,out] | a_dst | Destination data |
| [in] | a_src | Source data |
| [in] | a_level | Grid level |
| [in] | a_toRealm | Destination realm |
| [in] | a_fromRealm | Source realm |
| [in] | a_dstComps | Destination components |
| [in] | a_srcComps | Source components |
| [in] | a_fromRegion | Region we copy from |
| [in] | a_toRegion | Region we copy into |
| void AmrMesh::deallocate | ( | EBAMRData< T > & | a_data | ) | const |
Deallocate data.
| [in,out] | a_data | Data to be deallocated. |
| void AmrMesh::deallocate | ( | Vector< RefCountedPtr< T >> & | a_data | ) | const |
Deallocate smart pointer data.
| [in,out] | a_data | Data to be deallocated. |
| void AmrMesh::deallocate | ( | Vector< T * > & | a_data | ) | const |
Deallocate data.
| [in,out] | a_data | Data to be deleted. |
| void AmrMesh::depositParticles | ( | EBAMRCellData & | a_meshData, |
| const std::string & | a_realm, | ||
| const phase::which_phase & | a_phase, | ||
| const ParticleContainer< P > & | a_particles, | ||
| const DepositionType | a_depositionType, | ||
| const CoarseFineDeposition | a_coarseFineDeposition, | ||
| const bool | a_forceIrregNGP = false |
||
| ) |
Deposit scalar particle quantities on the mesh.
This routine will switch between various algorithms depending on the user input. If the user chooses to deposit with "halos" near the refinement boundaries then this function requires the "halo" particles to be filled before entering this routine. Thus, if depositing with halos (which requires kernels with 2x or 4x the particle width), the user must first call ParticleContainer::copyMaskParticles(AMRMask). If the user does not do this, he will lose mass near the refinement boundaries. Other than that, this function is just like regular particle-mesh deposition. The mesh field should have exactly one component and the quantity to be deposited is fetched from the specified template parameter 'a_particleScalarField'. This should be a pointer to a member function with signature const Real& P::function() const. E.g. if we are depositing mass through a function const Real& P::mass() const we will specifiy
interpolate<P, &P::mass> (...)
To deposit a different quantity, simply change the function pointer in the input parameter.
| [out] | a_meshData | Mesh data. Must have exactly one compnent. |
| [in] | a_realm | Realm where data is registered. |
| [in] | a_phase | Phase where data is registered. |
| [in] | a_particles | Particle container. Must be in "usable state" for deposition. |
| [in] | a_depositionType | Specification of deposition kernel (e.g., CIC) |
| [in] | a_coarseFineDeposition | Specification of handling of coarse-fine boundaries. |
| [in] | a_forceIrregNGP | Force NGP deposition in irregular cells or not. |
| void AmrMesh::depositParticles | ( | EBAMRCellData & | a_meshData, |
| const std::string & | a_realm, | ||
| const phase::which_phase & | a_phase, | ||
| const ParticleContainer< P > & | a_particles, | ||
| const DepositionType | a_depositionType, | ||
| const CoarseFineDeposition | a_coarseFineDeposition, | ||
| const bool | a_forceIrregNGP = false |
||
| ) |
Deposit scalar particle quantities on the mesh.
Precisely like the above function, except that the function signature is Real P::particleScalarField() const (C++ is not too smart about these things)
| [out] | a_meshData | Mesh data. Must have exactly one compnent. |
| [in] | a_realm | Realm where data is registered. |
| [in] | a_phase | Phase where data is registered. |
| [in] | a_particles | Particle container. Must be in "usable state" for deposition. |
| [in] | a_depositionType | Specification of deposition kernel (e.g., CIC) |
| [in] | a_coarseFineDeposition | Specification of handling of coarse-fine boundaries. |
| [in] | a_forceIrregNGP | Force NGP deposition in irregular cells or not. |
| void AmrMesh::depositParticles | ( | EBAMRCellData & | a_meshData, |
| const std::string & | a_realm, | ||
| const phase::which_phase & | a_phase, | ||
| const ParticleContainer< P > & | a_particles, | ||
| const DepositionType | a_depositionType, | ||
| const CoarseFineDeposition | a_coarseFineDeposition, | ||
| const bool | a_forceIrregNGP = false |
||
| ) |
Deposit vector particle quantities on the mesh.
This routine will switch between various algorithms depending on the user input. If the user chooses to deposit with "halos" near the refinement boundaries then this function requires the "halo" particles to be filled before entering this routine. Thus, if depositing with halos (which requires kernels with 2x or 4x the particle width), the user must first call ParticleContainer::copyMaskParticles(AMRMask). If the user does not do this, he will lose mass near the refinement boundaries. Other than that, this function is just like regular particle-mesh deposition. The mesh field should have exactly SpaceDim components and the quantity to be deposited is fetched from the specified template parameter 'a_particleVectorField'. This should be a pointer to a member function with signature const RealVect& P::function() const. E.g. if we are depositing current through a function const RealVect& P::current() const we will specifiy
interpolate<P, &P::current> (...)
To deposit a different quantity, simply change the function pointer in the input parameter.
| [out] | a_meshData | Mesh data. Must have exactly one compnent. |
| [in] | a_realm | Realm where data is registered. |
| [in] | a_phase | Phase where data is registered. |
| [in] | a_particles | Particle container. Must be in "usable state" for deposition. |
| [in] | a_depositionType | Specification of deposition kernel (e.g., CIC) |
| [in] | a_coarseFineDeposition | Specification of handling of coarse-fine boundaries. |
| [in] | a_forceIrregNGP | Force NGP deposition in irregular cells or not. |
| void AmrMesh::depositParticles | ( | EBAMRCellData & | a_meshData, |
| const std::string & | a_realm, | ||
| const phase::which_phase & | a_phase, | ||
| const ParticleContainer< P > & | a_particles, | ||
| const DepositionType | a_depositionType, | ||
| const CoarseFineDeposition | a_coarseFineDeposition, | ||
| const bool | a_forceIrregNGP = false |
||
| ) |
Deposit vector particle quantities on the mesh.
Precisely like the above function, except that the function signature is RealVect P::particleVectorField() const (C++ is not too smart about these things)
| [out] | a_meshData | Mesh data. Must have exactly one compnent. |
| [in] | a_realm | Realm where data is registered. |
| [in] | a_phase | Phase where data is registered. |
| [in] | a_particles | Particle container. Must be in "usable state" for deposition. |
| [in] | a_depositionType | Specification of deposition kernel (e.g., CIC) |
| [in] | a_coarseFineDeposition | Specification of handling of coarse-fine boundaries. |
| [in] | a_forceIrregNGP | Force NGP deposition in irregular cells or not. |
|
noexcept |
Deposit scalar particle quantities on the mesh.
Usage has signature depositParticles<P, &P::mass> (...)
To deposit a different quantity, simply change the function pointer in the input parameter.
| [out] | a_meshData | Mesh data. MUST have exactly one compnent. |
| [in] | a_realm | Realm where data is registered. |
| [in] | a_phase | Phase where data is registered. |
| [in] | a_particles | Particle container. Must be in "usable state" for deposition. |
|
noexcept |
Deposit scalar particle quantities on the mesh.
Usage has signature depositParticles<P, &P::mass> (...)
To deposit a different quantity, simply change the function pointer in the input parameter.
| [out] | a_meshData | Mesh data. MUST have exactly one compnent. |
| [in] | a_realm | Realm where data is registered. |
| [in] | a_phase | Phase where data is registered. |
| [in] | a_particles | Particle container. Must be in "usable state" for deposition. |
| const RefCountedPtr< BaseIF > & AmrMesh::getBaseImplicitFunction | ( | const phase::which_phase | a_phase | ) | const |
Get implicit function for a specific phase.
| [in] | a_phase | Phase 8gas or solid) |
| BoxSorting AmrMesh::getBoxSorting | ( | ) | const |
Get box sorting method.
| const IrregAmrStencil< CentroidInterpolationStencil > & AmrMesh::getCentroidInterpolationStencils | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
Get interpolation stencils for going from cell center to cell centroid.
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| const IrregAmrStencil< EbCentroidInterpolationStencil > & AmrMesh::getEbCentroidInterpolationStencils | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
Get interpolation stencils for going from cell center to cell boundary centroid.
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| bool AmrMesh::getEbCf | ( | ) | const |
Check if mesh has an EBCF.
|
inline |
Get EBIndexSpace corresponding to a particular phase.
| [in] | a_phase | Phase (gas/solid) |
| const Vector< EBISLayout > & AmrMesh::getEBISLayout | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
| const Vector< RefCountedPtr< EBLevelGrid > > & AmrMesh::getEBLevelGrid | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
| const Vector< RefCountedPtr< EBLevelGrid > > & AmrMesh::getEBLevelGridCoFi | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
| Vector< RefCountedPtr< EBCoarseToFineInterp > > & AmrMesh::getFineInterp | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
Get interpolator.
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| Vector< RefCountedPtr< EBReflux > > & AmrMesh::getFluxRegister | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
Get flux register.
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| const EBAMRFAB & AmrMesh::getLevelset | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
| const Vector< RefCountedPtr< LevelTiles > > & AmrMesh::getLevelTiles | ( | const std::string | a_realm | ) | const |
Get the tiled space representation.
| [in] | a_realm | Realm name |
| const AMRMask & AmrMesh::getMask | ( | const std::string | a_mask, |
| const int | a_buffer, | ||
| const std::string | a_realm | ||
| ) | const |
Get a registered mask.
| [in] | a_mask | Mask name |
| [in] | a_buffer | Buffer (used when registering mask) |
| [in] | a_realm | Realm name |
| const Vector< RefCountedPtr< MFLevelGrid > > & AmrMesh::getMFLevelGrid | ( | const std::string | a_realm | ) | const |
| Vector< RefCountedPtr< EBMultigridInterpolator > > & AmrMesh::getMultigridInterpolator | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
Get multigrid interpolation utility.
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| const IrregAmrStencil< NonConservativeDivergenceStencil > & AmrMesh::getNonConservativeDivergenceStencils | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
Get the nonconservative divergence stencils.
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| EBAMRParticleMesh & AmrMesh::getParticleMesh | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
Get EBAMRParticleMesh operator.
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| const Vector< DisjointBoxLayout > & AmrMesh::getProxyGrids | ( | ) | const |
Get the "proxy" grids in AmrMesh.
Returns m_grids
| std::vector< std::string > AmrMesh::getRealms | ( | ) | const |
Get the name of all Realms.
| Vector< RefCountedPtr< EBFluxRedistribution > > & AmrMesh::getRedistributionOp | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
Get the redistribution operators.
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| int AmrMesh::getRefinementRatio | ( | const int | a_level1, |
| const int | a_level2 | ||
| ) | const |
Get refinement factor between two levels.
| [in] | a_level1 | First level |
| [in] | a_level2 | Second level |
This will work correctly in reverse as well.
| EBAMRSurfaceDeposition & AmrMesh::getSurfaceDeposition | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
Get EBAMRSurfaceDeposition surface deposition operator.
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| const AMRMask & AmrMesh::getValidCells | ( | const std::string | a_realm | ) | const |
Get a map of all valid cells on a specified realm.
| [in] | a_realm | Realm name |
| Vector< RefCountedPtr< LayoutData< VoFIterator > > > & AmrMesh::getVofIterator | ( | const std::string | a_realm, |
| const phase::which_phase | a_phase | ||
| ) | const |
Get vof iterators for a Realm and phase. This has the capability of iterating through cut-cells.
Not const because we need to reset the vofiterator
| void AmrMesh::harmonicAverage | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Harmonic average of data. Does all components.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::harmonicAverage | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const Interval & | a_variables | ||
| ) | const |
Harmonic average of data. Does all components.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| [in] | a_variables | Variables |
| void AmrMesh::harmonicAverage | ( | EBAMRFluxData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Average down on specific realm and phase.
This computes an arithmetic average of the face data. Data on coarse faces is replaced by the arithmetic average of the fine face data.
| [in,out] | a_data | Data to be average. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::harmonicAverage | ( | EBAMRIVData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Harmonic average on specific realm and phase.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::harmonicAverage | ( | MFAMRCellData & | a_data, |
| const std::string | a_realm | ||
| ) | const |
Harmonic coarsening of multifluid data.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| void AmrMesh::harmonicAverage | ( | MFAMRFluxData & | a_data, |
| const std::string | a_realm | ||
| ) | const |
Average multifluid data over a realm.
This computes an arithmetic average of the face data. Data on coarse faces is replaced by the arithmetic average of the fine face data.
| [in,out] | a_data | Data to be coarsened. |
| [in] | a_realm | Realm name |
| void AmrMesh::interpGhost | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Interpolate ghost vectors over a realm, using the default ghost cell interpolation method.
| [in,out] | a_data | Data to be interpolated. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::interpGhost | ( | LevelData< EBCellFAB > & | a_fineData, |
| const LevelData< EBCellFAB > & | a_coarData, | ||
| const int | a_level, | ||
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Interpolate ghost cells over a realm, using the default ghost cell interpolation method on a specific level.
| [in,out] | a_fineData | Fine grid data |
| [in,out] | a_coarData | Coarse grid data |
| [in] | a_level | The grid level corresponding to a_fineData |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::interpGhost | ( | MFAMRCellData & | a_data, |
| const std::string | a_realm | ||
| ) | const |
Interpolate ghost cells over a realm. Calls the default ghost cell interpolation method.
| [in,out] | a_data | Data to be interpolated |
| [in] | a_realm | Realm name |
| void AmrMesh::interpGhostMG | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Interpolate ghost cells over a realm and phase.
This routine uses the multigrid interpolator, which does not reach into invalid regions. I.e., all ghost cells are interpolated using valid data only.
| [in,out] | a_data | Data to be interpolated |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::interpGhostMG | ( | MFAMRCellData & | a_data, |
| const std::string | a_realm | ||
| ) | const |
Interpolate ghost cells over a realm and phase.
This routine uses the multigrid interpolator, which does not reach into invalid regions. I.e., all ghost cells are interpolated using valid data only.
| [in,out] | a_data | Data to be interpolated |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::interpGhostPwl | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Interpolate ghost cells over a realm and phase. This uses piecewise linear interpolation (with limiters)
| [in,out] | a_data | Data to be interpolated |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::interpGhostPwl | ( | MFAMRCellData & | a_data, |
| const std::string | a_realm | ||
| ) | const |
Interpolate ghost cells over a realm and phase. This uses piecewise linear interpolation (with limiters)
| [in,out] | a_data | Data to be interpolated |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| void AmrMesh::interpolateParticles | ( | ParticleContainer< P > & | a_particles, |
| const std::string & | a_realm, | ||
| const phase::which_phase & | a_phase, | ||
| const EBAMRCellData & | a_meshScalarField, | ||
| const DepositionType | a_interpType, | ||
| const bool | a_forceIrregNGP = false |
||
| ) | const |
Interpolate a scalar field onto the particle position.
This is just like regular particle-mesh interpolation. The input field should have exactly one component and the the field will be interpolated onto the template parameter's input field. The template parameter 'particleScalarField' should be a pointer to a member function which will set the particle field. E.g. the function must have a signature Real& P::particleScalarField(). A valid expression is e.g.
interpolate<P, &P::mass> (...)
To interpolate onto a different field, replace ::mass by the other scalar field.
| [in,out] | a_particles | Particles to be interpolated. |
| [in] | a_realm | Realm where data is registered. |
| [in] | a_phase | Phase where data is registered. |
| [in] | a_meshScalarField | Scalar field on the mesh |
| [in] | a_interpType | Interpolation type. |
| [in] | a_forceIrregNGP | Force NGP interpolation in cut-cells. |
| void AmrMesh::interpolateParticles | ( | ParticleContainer< P > & | a_particles, |
| const std::string & | a_realm, | ||
| const phase::which_phase & | a_phase, | ||
| const EBAMRCellData & | a_meshVectorField, | ||
| const DepositionType | a_interpType, | ||
| const bool | a_forceIrregNGP = false |
||
| ) | const |
Interpolate a vector field onto the particle position.
This is just like regular particle-mesh interpolation. The input field should have exactly SpaceDim components and the the field will be interpolated onto the template parameter's input field. The template parameter 'particleVectorField' should be a pointer to a member function which will set the particle field. E.g. the function must have a signature RealVect& P::particleVectorField(). A valid expression is e.g.
interpolate<P, &P::velocity> (...)
To interpolate onto a different field, replace ::velocity by another vector field.
| [in,out] | a_particles | Particles to be interpolated. |
| [in] | a_realm | Realm where data is registered. |
| [in] | a_phase | Phase where data is registered. |
| [in] | a_meshScalarField | Scalar field on the mesh |
| [in] | a_interpType | Interpolation type. |
| [in] | a_forceIrregNGP | Force NGP interpolation in cut-cells. |
| void AmrMesh::interpToCentroids | ( | EBAMRCellData & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) | const |
Interpolate data to centroids on realm and phase.
| [in,out] | a_data | Data to be interpolated |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
This leaves regular data intact, while the values in irregular are replaced by the corresponding interpolation to centroids.
| void AmrMesh::interpToCentroids | ( | LevelData< EBCellFAB > & | a_data, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase, | ||
| const int | a_level | ||
| ) | const |
Interpolate data to centroids.
| [in,out] | a_data | Data to be interpolated |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid) |
| [in] | a_level | Grid level |
| void AmrMesh::interpToNewGrids | ( | EBAMRCellData & | a_newData, |
| const EBAMRCellData & | a_oldData, | ||
| const phase::which_phase | a_phase, | ||
| const int | a_lmin, | ||
| const int | a_oldFinestLevel, | ||
| const int | a_newFinestLevel, | ||
| const EBCoarseToFineInterp::Type | a_type | ||
| ) |
Interpolate data to new grids.
This is called when requiring data to be interpolated to new grids. Takes old data as argument and fills the new grid data with an interpolation of the old grid data.
| [out] | a_newData | New grid data. |
| [in] | a_oldData | Old grid data. |
| [in] | a_phase | Phase on which we regrid. |
| [in] | a_lmin | Coarsest level that did not change (but distribution may have changed). |
| [in] | a_oldFinestLevel | Previous finest level. |
| [in] | a_newFinestLevel | New finest level. |
| [in] | a_type | Interpolation type |
| void AmrMesh::interpToNewGrids | ( | EBAMRIVData & | a_newData, |
| const EBAMRIVData & | a_oldData, | ||
| const phase::which_phase | a_phase, | ||
| const int | a_lmin, | ||
| const int | a_oldFinestLevel, | ||
| const int | a_newFinestLevel, | ||
| const EBCoarseToFineInterp::Type | a_type | ||
| ) |
Interpolate data to new grids.
This is called when requiring data to be interpolated to new grids. Takes old data as argument and fills the new grid data with an interpolation of the old grid data.
| [out] | a_newData | New grid data. |
| [in] | a_oldData | Old grid data. |
| [in] | a_phase | Phase on which we regrid. |
| [in] | a_lmin | Coarsest level that did not change (but distribution may have changed). |
| [in] | a_oldFinestLevel | Previous finest level. |
| [in] | a_newFinestLevel | New finest level. |
| [in] | a_type | Interpolation type |
| void AmrMesh::interpToNewGrids | ( | MFAMRCellData & | a_newData, |
| const MFAMRCellData & | a_oldData, | ||
| const int | a_lmin, | ||
| const int | a_oldFinestLevel, | ||
| const int | a_newFinestLevel, | ||
| const EBCoarseToFineInterp::Type | a_type | ||
| ) |
Interpolate data to new grids.
This is called when requiring data to be interpolated to new grids. Takes old data as argument and fills the new grid data with an interpolation of the old grid data.
| [out] | a_newData | New grid data. |
| [in] | a_oldData | Old grid data. |
| [in] | a_lmin | Coarsest level that did not change (but distribution may have changed). |
| [in] | a_oldFinestLevel | Previous finest level. |
| [in] | a_newFinestLevel | New finest level. |
| [in] | a_type | Interpolation type |
|
noexcept |
Particle intersection algorithm based on bisection.
This routine will iterate through all the particles and check if they intersect the geometry. The template parameter indicates the particle type – it MUST have const RealVec& position() const and const RealVect& oldPosition() const functions that determine the start and stop position of the particle trajectory. This routine uses a bisection method to check for intersections with the EB (the domain side is much easier). Their position are updated and they are placed in the a_ebParticles argument.
| [in,out] | a_activeParticles | Particles to be intersected with geometry |
| [out] | a_ebParticles | Particles that intersected with the EB |
| [out] | a_domainParticles | Particles that intersected with the domain faces |
| [in] | a_phase | Phase where the input particles live |
| [in] | a_bisectionStep | Length of the bisection step |
| [in] | a_deleteParticles | If true, particles will be removed from a_activeParticles if they intersect the geometry. |
| [in] | a_nonDeletionModifier | Optional input argument for letting the user manipulate particles that were intersected but not deleted |
|
noexcept |
Particle intersection algorithm based on ray-casting.
This routine will iterate through all the particles and check if they intersect the geometry. The template parameter indicates the particle type – it MUST have const RealVec& position() const and const RealVect& oldPosition() const functions that determine the start and stop position of the particle trajectory. This routine uses a ray-casting method to check for intersections with the EB (the domain side is much easier). If the particles are closer to the EB than a_tolerance, they are absorbed and placed on the EB. Their position are updated and they are placed in the a_ebParticles argument. This routine uses a ray-casting method where it computes the distance from the EB (assuming that the implicit function is a signed distance function). Particles are then moved that distance along their trajectory and we then update the new distance to the EB. This is done recursively until the particles have either moved the entire length or been absorbed by the EB or domain side.
| [in,out] | a_activeParticles | Particles to be intersected with geometry |
| [out] | a_ebParticles | Particles that intersected with the EB |
| [out] | a_domainParticles | Particles that intersected with the domain faces |
| [in] | a_phase | Phase where the input particles live |
| [in] | a_bisectionStep | Length of the bisection step |
| [in] | a_deleteParticles | If true, particles will be removed from a_activeParticles if they intersect the geometry. |
| [in] | a_nonDeletionModifier | Optional input argument for letting the user manipulate particles that were intersected but not deleted |
Disallowed move assignment.
| [in] | a_other | Other AmrMesh |
Disallowed copy assignment.
| [in] | a_other | Other AmrMesh |
|
protected |
Parse number of ghost cells for eb stuff.
Only matters for the grid generation step.
|
protected |
Parse the maximum permitted box size.
Only relevant for the grid generation step.
| void AmrMesh::parseRuntimeOptions | ( | ) |
Parse runtime options.
| bool AmrMesh::queryRealm | ( | const std::string | a_realm | ) | const |
Query if a realm exists.
| [in] | a_realm | Name of the realm. |
| void AmrMesh::reallocate | ( | EBAMRBool & | a_data, |
| const int | a_lmin | ||
| ) | const |
Reallocate data.
| [out] | a_data | Data to be reallocated |
| [in] | a_lmin | The lowest grid level that will be reallocated. |
This will reallocate data for all grid levels lvl >= a_lmin.
| void AmrMesh::reallocate | ( | EBAMRCellData & | a_data, |
| const phase::which_phase | a_phase, | ||
| const int | a_lmin | ||
| ) | const |
Reallocate data.
| [out] | a_data | Data to be reallocated |
| [in] | a_phase | Phase over the reallocation. |
| [in] | a_lmin | The lowest grid level that will be reallocated. |
This will reallocate data for all grid levels lvl >= a_lmin.
| void AmrMesh::reallocate | ( | EBAMRFluxData & | a_data, |
| const phase::which_phase | a_phase, | ||
| const int | a_lmin | ||
| ) | const |
Reallocate data.
| [out] | a_data | Data to be reallocated |
| [in] | a_phase | Phase over the reallocation. |
| [in] | a_lmin | The lowest grid level that will be reallocated. |
This will reallocate data for all grid levels lvl >= a_lmin.
| void AmrMesh::reallocate | ( | EBAMRIFData & | a_data, |
| const phase::which_phase | a_phase, | ||
| const int | a_lmin | ||
| ) | const |
Reallocate data.
| [out] | a_data | Data to be reallocated |
| [in] | a_phase | Phase over the reallocation. |
| [in] | a_lmin | The lowest grid level that will be reallocated. |
This will reallocate data for all grid levels lvl >= a_lmin.
| void AmrMesh::reallocate | ( | EBAMRIVData & | a_data, |
| const phase::which_phase | a_phase, | ||
| const int | a_lmin | ||
| ) | const |
Reallocate data.
| [out] | a_data | Data to be reallocated |
| [in] | a_phase | Phase over the reallocation. |
| [in] | a_lmin | The lowest grid level that will be reallocated. |
This will reallocate data for all grid levels lvl >= a_lmin.
| void AmrMesh::reallocate | ( | MFAMRCellData & | a_data, |
| const int | a_lmin | ||
| ) | const |
Reallocate data.
| [out] | a_data | Data to be reallocated |
| [in] | a_lmin | The lowest grid level that will be reallocated. |
This will reallocate data for all grid levels lvl >= a_lmin.
| void AmrMesh::reallocate | ( | MFAMRFluxData & | a_data, |
| const int | a_lmin | ||
| ) | const |
Reallocate data.
| [out] | a_data | Data to be reallocated |
| [in] | a_lmin | The lowest grid level that will be reallocated. |
This will reallocate data for all grid levels lvl >= a_lmin.
| void AmrMesh::reallocate | ( | MFAMRIVData & | a_data, |
| const int | a_lmin | ||
| ) | const |
Reallocate data.
| [out] | a_data | Data to be reallocated |
| [in] | a_lmin | The lowest grid level that will be reallocated. |
This will reallocate data for all grid levels lvl >= a_lmin.
| void AmrMesh::registerMask | ( | const std::string | a_mask, |
| const int | a_buffer, | ||
| const std::string | a_realm | ||
| ) |
Register a boolean mask over a realm.
| [in] | a_mask | Mask name to be registered. |
| [in] | a_phase | Phase (gas or solid). |
| [in] | a_buffer | Relevant buffer for the mask. |
| void AmrMesh::registerOperator | ( | const std::string | a_operator, |
| const std::string | a_realm, | ||
| const phase::which_phase | a_phase | ||
| ) |
Register an operator over a realm and a phase.
| [in] | a_operator | Operator to be registered. |
| [in] | a_realm | Realm name |
| [in] | a_phase | Phase (gas or solid). |
| void AmrMesh::registerRealm | ( | const std::string | a_realm | ) |
| void AmrMesh::regridAmr | ( | const Vector< IntVectSet > & | a_tags, |
| const int | a_lmin, | ||
| const int | a_hardcap = -1 |
||
| ) |
Regrid AMR. This versions generates the grids and Realms, but not the operator.
| [in] | a_tags | Cell tags which will generate the grid. |
| [in] | a_lmin | Coarsest grid level allowed to change. |
| [in] | a_hardcap | Grid generation hardcap. If < 0 there are no limitations to grid depth. |
| void AmrMesh::regridOperators | ( | const int | a_lmin | ) |
Regrid AMR operators. This is done for all realms.
| [in] | a_lmin | Coarsest grid level that changes. |
| void AmrMesh::regridOperators | ( | const std::string | a_realm, |
| const int | a_lmin | ||
| ) |
Regrid AMR operators. This is done for a specific realm.
| [in] | a_realm | Realm |
| [in] | a_lmin | Coarsest grid level that changes. |
| void AmrMesh::regridRealm | ( | const std::string | a_realm, |
| const Vector< Vector< int >> & | a_procs, | ||
| const Vector< Vector< Box >> & | a_boxes, | ||
| const int | a_lmin | ||
| ) |
Regrid a realm. This generates the grids for the realm, but does not do the operators on the realm.
| [in] | a_realm | Realm name |
| [in] | a_procs | Processor IDs |
| [in] | a_boxes | Grid boxes |
| [in] | a_lmin | Coarsest level that changes. |
|
noexcept |
Regrid particle to new grids.
| [in] | a_lmin | Coarsest level that did not change (but distribution may have changed). |
| [in] | a_newFinestLevel | New finest level. |
| void AmrMesh::removeCoveredParticlesDiscrete | ( | ParticleContainer< P > & | a_particles, |
| const phase::which_phase & | a_phase, | ||
| const Real | a_tolerance = 0.0 |
||
| ) | const |
Function which removes particles from the domain if they fall inside the EB.
The template parameter indicate the particle type – it MUST have a const RealVect& P::position() const function.
This version uses the discrete information to evaluate whether or not the particles are inside the EB. The particles will be removed from the container if they lie within a covered cell OR if they lie in an irregular cell but on the "wrong" side of the EB face (to within precision tolerance*dx)
| [in,out] | a_particles | Particle data |
| [in] | a_phase | Phase where the particles live. |
| [in] | a_tolerance | Tolerance when to remove particles |
| void AmrMesh::removeCoveredParticlesIF | ( | ParticleContainer< P > & | a_particles, |
| const phase::which_phase & | a_phase, | ||
| const Real | a_tolerance = 0.0 |
||
| ) | const |
Function which removes particles from the domain if they fall inside the EB.
The template parameter indicate the particle type – it MUST have a const RealVect& P::position() const function.
This version uses the implicit function to evaluate whether or not the particles are inside the EB. The particles will be removed from the container if f(x) > a_tolerance*dx.
| [in,out] | a_particles | Particle data |
| [in] | a_phase | Phase where the particles live. |
| [in] | a_tolerance | Tolerance. |
| void AmrMesh::removeCoveredParticlesVoxels | ( | ParticleContainer< P > & | a_particles, |
| const phase::which_phase & | a_phase | ||
| ) | const |
Function which removes particles from the domain if they fall inside the EB.
The template parameter indicate the particle type – it must have a const RealVect& P::position() function.
This version removes all particles that live in covered cells.
| [in,out] | a_particles | Particle data |
| [in] | a_phase | Phase where the particles live. |
| void AmrMesh::setBaseImplicitFunction | ( | const phase::which_phase | a_phase, |
| const RefCountedPtr< BaseIF > & | a_baseIF | ||
| ) |
Set implicit function for a specific phase. Need e.g. for level-sets.
| [in] | a_phase | Phase |
| [in] | a_baseIF | The level-set function describing the phase. |
| void AmrMesh::setFinestLevel | ( | const int | a_finestLevel | ) |
Set the finest level.
| [in] | a_finestLevel |
| void AmrMesh::setGrids | ( | const Vector< Vector< Box >> & | a_boxes, |
| const std::map< std::string, Vector< Vector< long int >>> & | a_realmsAndLoads | ||
| ) |
| void AmrMesh::setMultifluidIndexSpace | ( | const RefCountedPtr< MultiFluidIndexSpace > & | a_multiFluidIndexSpace | ) |
Sets multifluid index space.
| [in] | a_multiFluidIndexSpace | Multifluid index space wrapper. |
|
noexcept |
Slice cell-centered data in order to fetch a subset of components.
| [in] | a_other | Original data |
| [in] | a_variables | Variables |
|
noexcept |
Slice cell-centered data in order to fetch a subset of components.
| [in] | a_other | Original data |
| [in] | a_variables | Variables |
| void AmrMesh::transferCoveredParticlesDiscrete | ( | ParticleContainer< P > & | a_particlesFrom, |
| ParticleContainer< P > & | a_particlesTo, | ||
| const phase::which_phase & | a_phase, | ||
| const Real | a_tolerance = 0.0 |
||
| ) | const |
Function which transferse particles from one particle container to another if they fall inside the EB.
The template parameter indicate the particle type – it MUST have a const RealVect& P::position() const function.
This version uses the discrete information to evaluate whether or not the particles are inside the EB. The particles will be transferred from the container if they lie within a covered cell OR if they lie in an irregular cell but on the "wrong" side of the EB face (to within precision tolerance*dx)
| [in,out] | a_particlesFrom | Container to transfer from |
| [in,out] | a_particlesTo | Container to transfer to |
| [in] | a_phase | Phase where the particles live. |
| [in] | a_tolerance | Tolerance. |
| void AmrMesh::transferCoveredParticlesIF | ( | ParticleContainer< P > & | a_particlesFrom, |
| ParticleContainer< P > & | a_particlesTo, | ||
| const phase::which_phase & | a_phase, | ||
| const Real | a_tolerance = 0.0 |
||
| ) | const |
Function which transferse particles from one particle container to another if they fall inside the EB.
The template parameter indicate the particle type – it MUST have a const RealVect& P::position() const function.
This version uses the implicit function to evaluate whether or not the particles are inside the EB. The particles will be transferred from the container if f(x) > a_tolerance*dx.
| [in,out] | a_particlesFrom | Container to transfer from |
| [in,out] | a_particlesTo | Container to transfer to |
| [in] | a_phase | Phase where the particles live. |
| [in] | a_tolerance | Tolerance (Note: relative to grid resolution) |
| void AmrMesh::transferCoveredParticlesVoxels | ( | ParticleContainer< P > & | a_particlesFrom, |
| ParticleContainer< P > & | a_particlesTo, | ||
| const phase::which_phase & | a_phase | ||
| ) | const |
Function which transferse particles from one particle container to another if they fall inside the EB.
The template parameter indicate the particle type – it MUST have a const RealVect& P::position() const function.
This version transfers all particles that live in covered cells.
| [in,out] | a_particlesFrom | Container to transfer from |
| [in,out] | a_particlesTo | Container to transfer to |
| [in] | a_phase | Phase where the particles live. |
| [in] | a_tolerance | Tolerance. |
|
noexcept |
Transfer particles that are on the wrong side of the EB to a different container.
| [in,out] | a_dstParticles | Destination particle container |
| [in,out] | a_srcParticles | Source particle container |
| [in] | a_phase | Phase where the particles should live |
| [in] | a_transferModifier | Optional input argument for letting the user manipulate particles that were transferred |
|
protected |
Storage for copiers from the old grids to the new ones.
|
protected |
Storage for copiers from the old grids to the new ones.
|
protected |
Map for copying between various Realms. First index is the "from" realm and second index is the "to" realm.
|
protected |
Map for copying between various Realms. First index is the "from" realm and second index is the "to" realm.
|
protected |
Map for copying between various Realms. First index is the "from" realm and second index is the "to" realm.
|
protected |
Map for copying between various Realms. First index is the "from" realm and second index is the "to" realm.
1.9.1