chombo-discharge
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CD_AmrMesh.H
Go to the documentation of this file.
1/*
2 * SPDX-FileCopyrightText: 2021-2026 SINTEF Energy Research
3 *
4 * SPDX-License-Identifier: GPL-3.0-or-later
5 */
6
15#ifndef CD_AMRMESH_H
16#define CD_AMRMESH_H
17
18// Chombo includes
19#include <DisjointBoxLayout.H>
20#include <ProblemDomain.H>
21
22// Our includes
23#include <CD_EBAMRData.H>
24#include <CD_EBCoarAve.H>
25#include <CD_ComputationalGeometry.H>
26#include <CD_MultiFluidIndexSpace.H>
27#include <CD_LoadBalancing.H>
28#include <CD_MFLevelGrid.H>
29#include <CD_EBReflux.H>
30#include <CD_DomainFluxIFFAB.H>
31#include <CD_DomainFluxIFFABFactory.H>
32#include <CD_ParticleContainer.H>
33#include <CD_Realm.H>
34#include <CD_ParticleGhostMask.H>
35#include <CD_IrregularDeposition.H>
36#include <CD_CopyStrategy.H>
37#include <CD_LoadBalancing.H>
38#include <CD_NamespaceHeader.H>
39
45class AmrMesh
46{
47public:
51 AmrMesh();
52
57 AmrMesh(const AmrMesh& a_other) = delete;
58
63 AmrMesh(const AmrMesh&& a_other) = delete;
64
68 virtual ~AmrMesh();
69
74 AmrMesh&
75 operator=(const AmrMesh& a_other) = delete;
76
81 AmrMesh&
82 operator=(const AmrMesh&& a_other) = delete;
83
94 template <typename T>
95 void
96 copyData(EBAMRData<T>& a_dst,
97 const EBAMRData<T>& a_src,
98 const CopyStrategy& a_toRegion = CopyStrategy::Valid,
99 const CopyStrategy& a_fromRegion = CopyStrategy::Valid) const noexcept;
100
112 template <typename T>
113 void
114 copyData(EBAMRData<T>& a_dst,
115 const EBAMRData<T>& a_src,
116 const Interval& a_dstComps,
117 const Interval& a_srcComps,
118 const CopyStrategy& a_toRegion = CopyStrategy::Valid,
119 const CopyStrategy& a_fromRegion = CopyStrategy::Valid) const noexcept;
120
134 template <typename T>
135 void
136 copyData(LevelData<T>& a_dst,
137 const LevelData<T>& a_src,
138 const int a_level,
139 const std::string a_toRealm,
140 const std::string a_fromRealm,
141 const CopyStrategy& a_toRegion = CopyStrategy::Valid,
142 const CopyStrategy& a_fromRegion = CopyStrategy::Valid) const noexcept;
143
159 template <typename T>
160 void
161 copyData(LevelData<T>& a_dst,
162 const LevelData<T>& a_src,
163 const int a_level,
164 const std::string a_toRealm,
165 const std::string a_fromRealm,
166 const Interval& a_dstComps,
167 const Interval& a_srcComps,
168 const CopyStrategy& a_toRegion = CopyStrategy::Valid,
169 const CopyStrategy& a_fromRegion = CopyStrategy::Valid) const noexcept;
170
175 template <typename T>
176 void
177 deallocate(Vector<T*>& a_data) const;
178
183 template <typename T>
184 void
185 deallocate(Vector<RefCountedPtr<T>>& a_data) const;
186
191 template <typename T>
192 void
193 deallocate(EBAMRData<T>& a_data) const;
194
201 template <typename T>
202 void
203 alias(Vector<T*>& a_alias, const Vector<RefCountedPtr<T>>& a_data) const;
204
211 template <typename T, typename S>
212 void
213 alias(Vector<T*>& a_alias, const EBAMRData<S>& a_data) const;
214
222 template <typename P, typename Traits>
223 void
224 allocate(ParticleContainer<P, Traits>& a_container, const std::string& a_realm) const;
225
231 template <typename T>
232 void
233 allocatePointer(Vector<RefCountedPtr<T>>& a_data) const;
234
241 template <typename T>
242 void
243 allocatePointer(Vector<RefCountedPtr<T>>& a_data, const int a_finestLevel) const;
244
251 template <typename T>
252 void
253 allocatePointer(EBAMRData<T>& a_data, const std::string& a_realm) const;
254
262 template <typename T>
263 void
264 allocatePointer(EBAMRData<T>& a_data, const std::string& a_realm, const int a_finestLevel) const;
265
273 EBAMRCellData
274 slice(EBAMRCellData& a_original, const Interval a_variables) const noexcept;
275
283 EBAMRCellData
284 slice(const EBAMRCellData& a_original, const Interval a_variables) const noexcept;
285
289 void
290 parseOptions();
291
296 void
297 parseRuntimeOptions();
298
306 void
307 registerOperator(const std::string& a_operator, const std::string& a_realm, const phase::which_phase a_phase);
308
317 void
318 registerMask(const std::string& a_mask, const int a_buffer, const std::string& a_realm);
319
323 void
324 buildDomains();
325
332 void
333 setFinestLevel(const int a_finestLevel);
334
339 void
340 setCoarsestGrid(const IntVect& a_nCells);
341
347 bool
348 queryRealm(const std::string& a_realm) const;
349
355 bool
356 getEbCf() const;
357
363 void
364 registerRealm(const std::string& a_realm);
365
373 void
374 alias(EBAMRCellData& a_data,
375 const phase::which_phase a_phase,
376 const MFAMRCellData& a_mfdata,
377 const int a_finestLevel) const;
378
386 void
387 alias(EBAMRFluxData& a_data,
388 const phase::which_phase a_phase,
389 const MFAMRFluxData& a_mfdata,
390 const int a_finestLevel) const;
391
398 void
399 alias(EBAMRCellData& a_data, const phase::which_phase a_phase, const MFAMRCellData& a_mfdata) const;
400
407 void
408 alias(EBAMRFluxData& a_data, const phase::which_phase a_phase, const MFAMRFluxData& a_mfdata) const;
409
416 void
417 alias(EBAMRIVData& a_data, const phase::which_phase a_phase, const MFAMRIVData& a_mfdata) const;
418
425 EBAMRCellData
426 alias(const phase::which_phase a_phase, const MFAMRCellData& a_mfdata) const;
427
434 EBAMRFluxData
435 alias(const phase::which_phase a_phase, const MFAMRFluxData& a_mfdata) const;
436
443 EBAMRIVData
444 alias(const phase::which_phase a_phase, const MFAMRIVData& a_mfdata) const;
445
455 void
456 computeGradient(EBAMRCellData& a_gradient,
457 const EBAMRCellData& a_phi,
458 const std::string& a_realm,
459 const phase::which_phase a_phase) const;
460
470 void
471 computeGradient(EBAMRFluxData& a_gradient,
472 const EBAMRCellData& a_phi,
473 const std::string& a_realm,
474 const phase::which_phase a_phase) const;
475
484 void
485 computeGradient(MFAMRCellData& a_gradient, const MFAMRCellData& a_phi, const std::string& a_realm) const;
486
495 void
496 computeGradient(MFAMRFluxData& a_gradient, const MFAMRCellData& a_phi, const std::string& a_realm) const;
497
507 void
508 allocate(EBAMRCellData& a_data,
509 const std::string& a_realm,
510 const phase::which_phase a_phase,
511 const int a_nComp,
512 const int a_ghost = -1) const;
513
524 void
525 allocate(LevelData<EBCellFAB>& a_data,
526 const std::string& a_realm,
527 const phase::which_phase a_phase,
528 const int a_level,
529 const int a_nComp,
530 const int a_ghost = -1) const;
531
541 void
542 allocate(EBAMRFluxData& a_data,
543 const std::string& a_realm,
544 const phase::which_phase a_phase,
545 const int a_nComp,
546 const int a_ghost = -1) const;
547
557 void
558 allocate(EBAMRIVData& a_data,
559 const std::string& a_realm,
560 const phase::which_phase a_phase,
561 const int a_nComp,
562 const int a_ghost = -1) const;
563
573 void
574 allocate(EBAMRIFData& a_data,
575 const std::string& a_realm,
576 const phase::which_phase a_phase,
577 const int a_nComp,
578 const int a_ghost = -1) const;
579
588 void
589 allocate(EBAMRBool& a_data, const std::string& a_realm, const int a_nComp, const int a_ghost = -1) const;
590
601 void
602 allocate(EBAMRFAB& a_data, const std::string& a_realm, const int a_nComp, const int a_ghost = -1) const;
603
612 void
613 allocate(MFAMRCellData& a_data, const std::string& a_realm, const int a_nComp, const int a_ghost = -1) const;
614
623 void
624 allocate(MFAMRFluxData& a_data, const std::string& a_realm, const int a_nComp, const int a_ghost = -1) const;
625
634 void
635 allocate(MFAMRIVData& a_data, const std::string& a_realm, const int a_nComp, const int a_ghost = 0) const;
636
644 void
645 reallocate(EBAMRCellData& a_data, const phase::which_phase a_phase, const int a_lmin) const;
646
654 void
655 reallocate(EBAMRFluxData& a_data, const phase::which_phase a_phase, const int a_lmin) const;
656
664 void
665 reallocate(EBAMRIVData& a_data, const phase::which_phase a_phase, const int a_lmin) const;
666
674 void
675 reallocate(EBAMRIFData& a_data, const phase::which_phase a_phase, const int a_lmin) const;
676
683 void
684 reallocate(EBAMRBool& a_data, const int a_lmin) const;
685
692 void
693 reallocate(MFAMRCellData& a_data, const int a_lmin) const;
694
701 void
702 reallocate(MFAMRFluxData& a_data, const int a_lmin) const;
703
710 void
711 reallocate(MFAMRIVData& a_data, const int a_lmin) const;
712
719 void
720 average(MFAMRCellData& a_data, const std::string& a_realm, const Average& a_average) const;
721
727 void
728 arithmeticAverage(MFAMRCellData& a_data, const std::string& a_realm) const;
729
735 void
736 harmonicAverage(MFAMRCellData& a_data, const std::string& a_realm) const;
737
743 void
744 conservativeAverage(MFAMRCellData& a_data, const std::string& a_realm) const;
745
752 void
753 average(MFAMRFluxData& a_data, const std::string& a_realm, const Average& a_average) const;
754
762 void
763 arithmeticAverage(MFAMRFluxData& a_data, const std::string& a_realm) const;
764
772 void
773 harmonicAverage(MFAMRFluxData& a_data, const std::string& a_realm) const;
774
780 void
781 conservativeAverage(MFAMRFluxData& a_data, const std::string& a_realm) const;
782
790 void
791 average(EBAMRCellData& a_data,
792 const std::string& a_realm,
793 const phase::which_phase a_phase,
794 const Average& a_average) const;
795
804 void
805 average(EBAMRCellData& a_data,
806 const std::string& a_realm,
807 const phase::which_phase a_phase,
808 const Average& a_average,
809 const Interval& a_variables) const;
810
817 void
818 arithmeticAverage(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
819
827 void
828 arithmeticAverage(EBAMRCellData& a_data,
829 const std::string& a_realm,
830 const phase::which_phase a_phase,
831 const Interval& a_variables) const;
832
839 void
840 harmonicAverage(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
841
849 void
850 harmonicAverage(EBAMRCellData& a_data,
851 const std::string& a_realm,
852 const phase::which_phase a_phase,
853 const Interval& a_variables) const;
854
861 void
862 conservativeAverage(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
863
871 void
872 conservativeAverage(EBAMRCellData& a_data,
873 const std::string& a_realm,
874 const phase::which_phase a_phase,
875 const Interval& a_variables) const;
876
884 void
885 average(EBAMRFluxData& a_data,
886 const std::string& a_realm,
887 const phase::which_phase a_phase,
888 const Average& a_average) const;
889
898 void
899 arithmeticAverage(EBAMRFluxData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
900
909 void
910 harmonicAverage(EBAMRFluxData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
911
918 void
919 conservativeAverage(EBAMRFluxData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
920
928 void
929 average(EBAMRIVData& a_data,
930 const std::string& a_realm,
931 const phase::which_phase a_phase,
932 const Average& a_average) const;
933
940 void
941 arithmeticAverage(EBAMRIVData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
942
949 void
950 harmonicAverage(EBAMRIVData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
951
958 void
959 conservativeAverage(EBAMRIVData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
960
971 template <typename P, typename Traits>
972 void
973 depositParticles(EBAMRIVData& a_meshData,
974 const std::string& a_realm,
975 const phase::which_phase& a_phase,
976 const ParticleContainer<P, Traits>& a_particles) const noexcept;
977
990 template <typename P, typename Traits>
991 void
992 depositWeight(EBAMRCellData& a_meshData,
993 const std::string& a_realm,
994 const phase::which_phase& a_phase,
995 const ParticleContainer<P, Traits>& a_particles,
996 const DepositionType a_depositionType,
997 const CoarseFineDeposition a_coarseFineDeposition,
998 const IrregularDeposition a_irregularDeposition);
999
1016 template <typename P, typename Traits, typename CellGather>
1017 void
1018 depositGathered(EBAMRCellData& a_meshData,
1019 const std::string& a_realm,
1020 const phase::which_phase& a_phase,
1021 const ParticleContainer<P, Traits>& a_particles,
1022 const DepositionType a_depositionType,
1023 const CoarseFineDeposition a_coarseFineDeposition,
1024 const IrregularDeposition a_irregularDeposition,
1025 CellGather a_cellGather);
1026
1042 template <auto... Members, typename P, typename Traits>
1043 void
1044 depositParticles(EBAMRCellData& a_meshData,
1045 const std::string& a_realm,
1046 const phase::which_phase& a_phase,
1047 const ParticleContainer<P, Traits>& a_particles,
1048 const DepositionType a_depositionType,
1049 const CoarseFineDeposition a_coarseFineDeposition,
1050 const IrregularDeposition a_irregularDeposition);
1051
1063 template <typename P, typename Traits>
1064 void
1065 interpolateWeight(ParticleContainer<P, Traits>& a_particles,
1066 const std::string& a_realm,
1067 const phase::which_phase& a_phase,
1068 const EBAMRCellData& a_meshScalarField,
1069 const DepositionType a_interpType,
1070 const bool a_forceIrregNGP) const;
1071
1086 template <auto... Members, typename P, typename Traits>
1087 void
1088 interpolateParticles(ParticleContainer<P, Traits>& a_particles,
1089 const std::string& a_realm,
1090 const phase::which_phase& a_phase,
1091 const EBAMRCellData& a_meshField,
1092 const DepositionType a_interpType,
1093 const bool a_forceIrregNGP) const;
1094
1103 template <typename P, typename Traits>
1104 void
1105 removeCoveredParticlesIF(ParticleContainer<P, Traits>& a_particles,
1106 const phase::which_phase& a_phase,
1107 const Real a_tolerance) const;
1108
1118 template <typename P, typename Traits>
1119 void
1120 removeCoveredParticlesDiscrete(ParticleContainer<P, Traits>& a_particles,
1121 const phase::which_phase& a_phase,
1122 const Real a_tolerance) const;
1123
1131 template <typename P, typename Traits>
1132 void
1133 removeCoveredParticlesVoxels(ParticleContainer<P, Traits>& a_particles, const phase::which_phase& a_phase) const;
1134
1147 template <typename P, typename Traits>
1148 void
1149 transferCoveredParticlesIF(ParticleContainer<P, Traits>& a_particlesFrom,
1150 ParticleContainer<P, Traits>& a_particlesTo,
1151 const phase::which_phase& a_phase,
1152 const Real a_tolerance) const;
1153
1165 template <typename P, typename Traits>
1166 void
1167 transferCoveredParticlesDiscrete(ParticleContainer<P, Traits>& a_particlesFrom,
1168 ParticleContainer<P, Traits>& a_particlesTo,
1169 const phase::which_phase& a_phase,
1170 const Real a_tolerance) const;
1171
1180 template <typename P, typename Traits>
1181 void
1182 transferCoveredParticlesVoxels(ParticleContainer<P, Traits>& a_particlesFrom,
1183 ParticleContainer<P, Traits>& a_particlesTo,
1184 const phase::which_phase& a_phase) const;
1185
1196 template <typename P, typename Traits>
1197 void
1198 transferIrregularParticles(ParticleContainer<P, Traits>& a_dstParticles,
1199 ParticleContainer<P, Traits>& a_srcParticles,
1200 const phase::which_phase a_phase) const noexcept;
1201
1224 template <auto... OldPosition, typename P, typename Traits>
1225 void
1226 intersectParticlesRaycastIF(
1227 ParticleContainer<P, Traits>& a_activeParticles,
1228 ParticleContainer<P, Traits>& a_ebParticles,
1229 ParticleContainer<P, Traits>& a_domainParticles,
1230 const phase::which_phase a_phase,
1231 const Real a_tolerance,
1232 const bool a_deleteParticles,
1233 const std::function<void(ParticleSoA<P, Traits>&, std::size_t)>& a_nonDeletionModifier) const noexcept;
1234
1252 template <auto... OldPosition, typename P, typename Traits>
1253 void
1254 intersectParticlesBisectIF(
1255 ParticleContainer<P, Traits>& a_activeParticles,
1256 ParticleContainer<P, Traits>& a_ebParticles,
1257 ParticleContainer<P, Traits>& a_domainParticles,
1258 const phase::which_phase a_phase,
1259 const Real a_bisectionStep,
1260 const bool a_deleteParticles,
1261 const std::function<void(ParticleSoA<P, Traits>&, std::size_t)>& a_nonDeletionModifier) const noexcept;
1262
1269 void
1270 interpGhost(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
1271
1280 void
1281 interpGhost(LevelData<EBCellFAB>& a_fineData,
1282 const LevelData<EBCellFAB>& a_coarData,
1283 const int a_fineLevel,
1284 const std::string& a_realm,
1285 const phase::which_phase a_phase) const;
1286
1292 void
1293 interpGhost(MFAMRCellData& a_data, const std::string& a_realm) const;
1294
1300 void
1301 interpGhostPwl(MFAMRCellData& a_data, const std::string& a_realm) const;
1302
1309 void
1310 interpGhostPwl(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
1311
1319 void
1320 interpGhostMG(MFAMRCellData& a_data, const std::string& a_realm) const;
1321
1330 void
1331 interpGhostMG(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
1332
1344 void
1345 interpToNewGrids(MFAMRCellData& a_newData,
1346 const MFAMRCellData& a_oldData,
1347 const int a_lmin,
1348 const int a_oldFinestLevel,
1349 const int a_newFinestLevel,
1350 const EBCoarseToFineInterp::Type a_type);
1351
1364 void
1365 interpToNewGrids(EBAMRCellData& a_newData,
1366 const EBAMRCellData& a_oldData,
1367 const phase::which_phase a_phase,
1368 const int a_lmin,
1369 const int a_oldFinestLevel,
1370 const int a_newFinestLevel,
1371 const EBCoarseToFineInterp::Type a_type);
1372
1385 void
1386 interpToNewGrids(EBAMRIVData& a_newData,
1387 const EBAMRIVData& a_oldData,
1388 const phase::which_phase a_phase,
1389 const int a_lmin,
1390 const int a_oldFinestLevel,
1391 const int a_newFinestLevel,
1392 const EBCoarseToFineInterp::Type a_type);
1393
1403 template <typename P, typename Traits>
1404 void
1405 remapToNewGrids(ParticleContainer<P, Traits>& a_particles,
1406 const int a_lmin,
1407 const int a_newFinestLevel) const noexcept;
1408
1417 void
1418 interpToCentroids(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const noexcept;
1419
1427 void
1428 interpToCentroids(LevelData<EBCellFAB>& a_data,
1429 const std::string& a_realm,
1430 const phase::which_phase a_phase,
1431 const int a_level) const noexcept;
1432
1442 void
1443 interpToCentroids(EBCellFAB& a_centroidData,
1444 const EBCellFAB& a_cellData,
1445 const std::string& a_realm,
1446 const phase::which_phase a_phase,
1447 const int a_level,
1448 const DataIndex& a_din) const noexcept;
1449
1459 void
1460 interpToCentroids(EBAMRIVData& a_centroidData,
1461 const EBAMRCellData& a_cellData,
1462 const std::string& a_realm,
1463 const phase::which_phase a_phase) const noexcept;
1464
1473 void
1474 interpToCentroids(LevelData<BaseIVFAB<Real>>& a_centroidData,
1475 const LevelData<EBCellFAB>& a_cellData,
1476 const std::string& a_realm,
1477 const phase::which_phase a_phase,
1478 const int a_level) const noexcept;
1479
1487 void
1488 interpToEB(EBAMRIVData& a_centroidData,
1489 const EBAMRCellData& a_cellData,
1490 const std::string& a_realm,
1491 const phase::which_phase a_phase) const noexcept;
1492
1501 void
1502 interpToEB(LevelData<BaseIVFAB<Real>>& a_centroidData,
1503 const LevelData<EBCellFAB>& a_cellData,
1504 const std::string& a_realm,
1505 const phase::which_phase a_phase,
1506 const int a_level) const noexcept;
1507
1517 void
1518 interpToEB(BaseIVFAB<Real>& a_centroidData,
1519 const EBCellFAB& a_cellData,
1520 const std::string& a_realm,
1521 const phase::which_phase a_phase,
1522 const int a_level,
1523 const DataIndex& a_din) const noexcept;
1524
1534 void
1535 nonConservativeDivergence(EBAMRIVData& a_nonConsDivF,
1536 const EBAMRCellData& a_kappaDivF,
1537 const std::string& a_realm,
1538 const phase::which_phase& a_phase) const noexcept;
1539
1550 void
1551 nonConservativeDivergence(LevelData<BaseIVFAB<Real>>& a_nonConsDivF,
1552 const LevelData<EBCellFAB>& a_kappaDivF,
1553 const int& a_level,
1554 const std::string& a_realm,
1555 const phase::which_phase& a_phase) const noexcept;
1556
1561 void
1562 setMultifluidIndexSpace(const RefCountedPtr<MultiFluidIndexSpace>& a_multiFluidIndexSpace);
1563
1569 void
1570 setBaseImplicitFunction(const phase::which_phase a_phase, const RefCountedPtr<BaseIF>& a_baseIF);
1571
1575 void
1576 preRegrid();
1577
1584 void
1585 regridAmr(const Vector<IntVectSet>& a_tags, const int a_lmin, const int a_hardcap = -1);
1586
1596 void
1597 regridAmr(const Vector<Vector<Box>>& a_boxes, const int a_lmin);
1598
1606 void
1607 regridRealm(const std::string& a_realm,
1608 const Vector<Vector<int>>& a_procs,
1609 const Vector<Vector<Box>>& a_boxes,
1610 const int a_lmin);
1611
1615 void
1616 postRegrid();
1617
1624 void
1625 setGrids(const Vector<Vector<Box>>& a_boxes, const std::map<std::string, Vector<Vector<long int>>>& a_realmsAndLoads);
1626
1631 void
1632 regridOperators(const int a_lmin);
1633
1639 void
1640 regridOperators(const std::string& a_realm, const int a_lmin);
1641
1645 void
1646 sanityCheck() const;
1647
1652 int
1653 getFinestLevel() const;
1654
1659 int
1660 getMaxAmrDepth() const;
1661
1666 int
1667 getMaxSimulationDepth() const;
1668
1673 int
1674 getMinBlockSize() const;
1675
1681 int
1682 getBlockingFactor() const
1683 {
1684 return this->getMinBlockSize();
1685 }
1686
1691 int
1692 getMaxBlockSize() const;
1693
1699 int
1700 getMaxBoxSize() const
1701 {
1702 return this->getMaxBlockSize();
1703 }
1704
1709 int
1710 getBrBuffer() const;
1711
1716 int
1717 getMaxEbisBoxSize() const;
1718
1725 int
1726 getEbMinBlockSize() const;
1727
1733 int
1734 getEbMaxBlockSize() const;
1735
1740 int
1741 getNumberOfGhostCells() const;
1742
1747 int
1748 getNumberOfEbGhostCells() const;
1749
1754 int
1755 getRedistributionRadius() const;
1756
1761 Real
1762 getFinestDx() const;
1763
1768 RealVect
1769 getProbLo() const;
1770
1775 RealVect
1776 getProbHi() const;
1777
1782 ProblemDomain
1783 getFinestDomain() const;
1784
1789 const Vector<Real>&
1790 getDx() const;
1791
1796 const Vector<int>&
1797 getRefinementRatios() const;
1798
1806 int
1807 getRefinementRatio(const int a_level1, const int a_level2) const;
1808
1814 const RefCountedPtr<BaseIF>&
1815 getBaseImplicitFunction(const phase::which_phase a_phase) const;
1816
1822 const Vector<DisjointBoxLayout>&
1823 getProxyGrids() const;
1824
1830 const Vector<DisjointBoxLayout>&
1831 getGrids(const std::string& a_realm) const;
1832
1837 const Vector<ProblemDomain>&
1838 getDomains() const;
1839
1847 const AMRMask&
1848 getMask(const std::string& a_mask, const int a_buffer, const std::string& a_realm) const;
1849
1855 const AMRMask&
1856 getValidCells(const std::string& a_realm) const;
1857
1863 const Vector<RefCountedPtr<LevelTiles>>&
1864 getLevelTiles(const std::string& a_realm) const;
1865
1871 void
1872 registerParticleGhostMask(const std::string& a_realm, const int a_width);
1873
1880 const AMRParticleGhostMask&
1881 getParticleGhostMask(const std::string& a_realm, const int a_width) const;
1882
1891 const AMRParticleGhostMask&
1892 getParticleGhostMaskFineToCoar(const std::string& a_realm, const int a_width) const;
1893
1902 const AMRParticleGhostMask&
1903 getParticleGhostMaskCoarToFine(const std::string& a_realm, const int a_width) const;
1904
1910 const AMRParticleGhostMask&
1911 getTrivialParticleGhostMask() const;
1912
1923 const AMRMask&
1924 getParticleGhostExposure(const std::string& a_realm, const int a_width) const;
1925
1932 const Vector<RefCountedPtr<EBLevelGrid>>&
1933 getEBLevelGrid(const std::string& a_realm, const phase::which_phase a_phase) const;
1934
1941 const Vector<RefCountedPtr<EBLevelGrid>>&
1942 getEBLevelGridCoFi(const std::string& a_realm, const phase::which_phase a_phase) const;
1943
1950 const Vector<EBISLayout>&
1951 getEBISLayout(const std::string& a_realm, const phase::which_phase a_phase) const;
1952
1958 const Vector<RefCountedPtr<MFLevelGrid>>&
1959 getMFLevelGrid(const std::string& a_realm) const;
1960
1969 Vector<RefCountedPtr<LayoutData<VoFIterator>>>&
1970 getVofIterator(const std::string& a_realm, const phase::which_phase a_phase) const;
1971
1981 Vector<RefCountedPtr<LayoutData<VoFIterator>>>&
1982 getMultiCutVofIterator(const std::string& a_realm, const phase::which_phase a_phase) const;
1983
1992 Vector<RefCountedPtr<LayoutData<std::array<FaceIterator, SpaceDim>>>>&
1993 getFaceIterator(const std::string& a_realm, const phase::which_phase a_phase) const;
1994
2003 Vector<RefCountedPtr<LayoutData<std::array<FaceIterator, SpaceDim>>>>&
2004 getFaceIteratorNoBoundary(const std::string& a_realm, const phase::which_phase a_phase) const;
2005
2017 Vector<RefCountedPtr<LayoutData<std::array<FaceIterator, SpaceDim>>>>&
2018 getFaceIteratorWithTangentialGhosts(const std::string& a_realm, const phase::which_phase a_phase) const;
2019
2030 Vector<RefCountedPtr<LayoutData<std::array<FaceIterator, SpaceDim>>>>&
2031 getMultiCutFaceIterator(const std::string& a_realm, const phase::which_phase a_phase) const;
2032
2039 const EBAMRFAB&
2040 getLevelset(const std::string& a_realm, const phase::which_phase a_phase) const;
2041
2048 const EBAMRCellData&
2049 getRegularCells(const std::string& a_realm, const phase::which_phase a_phase) const;
2050
2057 const EBAMRCellData&
2058 getCoveredCells(const std::string& a_realm, const phase::which_phase a_phase) const;
2059
2066 const EBAMRCellData&
2067 getNotCoveredCells(const std::string& a_realm, const phase::which_phase a_phase) const;
2068
2075 const EBAMRCellData&
2076 getIrregularCells(const std::string& a_realm, const phase::which_phase a_phase) const;
2077
2086 const EBAMRCellData&
2087 getMirrorSurfaceData(const std::string& a_realm, const phase::which_phase a_phase) const;
2088
2097 const Vector<int>&
2098 getMirrorHasCutCells(const std::string& a_realm, const phase::which_phase a_phase) const;
2099
2104 Real
2105 getMirrorMaxJacobian() const;
2106
2111 Real
2112 getMirrorMinDenominator() const;
2113
2120 EBAMRParticleMesh&
2121 getParticleMesh(const std::string& a_realm, const phase::which_phase a_phase) const;
2122
2129 EBAMRSurfaceDeposition&
2130 getSurfaceDeposition(const std::string& a_realm, const phase::which_phase a_phase) const;
2131
2138 Vector<RefCountedPtr<EBCoarAve>>&
2139 getCoarseAverage(const std::string& a_realm, const phase::which_phase a_phase) const;
2140
2147 Vector<RefCountedPtr<EBMultigridInterpolator>>&
2148 getMultigridInterpolator(const std::string& a_realm, const phase::which_phase a_phase) const;
2149
2156 Vector<RefCountedPtr<EBCoarseToFineInterp>>&
2157 getFineInterp(const std::string& a_realm, const phase::which_phase a_phase) const;
2158
2165 Vector<RefCountedPtr<EBReflux>>&
2166 getFluxRegister(const std::string& a_realm, const phase::which_phase a_phase) const;
2167
2174 Vector<RefCountedPtr<EBFluxRedistribution>>&
2175 getRedistributionOp(const std::string& a_realm, const phase::which_phase a_phase) const;
2176
2177#ifdef CH_USE_PETSC
2182 const RefCountedPtr<PetscGrid>&
2183 getPetscGrid(const std::string& a_realm) const noexcept;
2184#endif
2185
2190 std::vector<std::string>
2191 getRealms() const;
2192
2197 BoxSorting
2198 getBoxSorting() const;
2199
2205 RefCountedPtr<EBIndexSpace>&
2206 getEBIndexSpace(const phase::which_phase a_phase)
2207 {
2208 return m_multifluidIndexSpace->getEBIndexSpace(a_phase);
2209 }
2210
2211protected:
2215 enum class GridGenerationMethod
2216 {
2217 BergerRigoutsous,
2218 Tiled,
2219 };
2220
2224 mutable std::map<std::string, RefCountedPtr<Realm>> m_realms;
2225
2229 std::map<phase::which_phase, RefCountedPtr<BaseIF>> m_baseif;
2230
2234 std::map<std::string, Vector<DisjointBoxLayout>> m_oldGrids;
2235
2240 std::map<std::string, Vector<Copier>> m_oldToNewCellCopiers;
2241
2246 std::map<std::string, Vector<Copier>> m_oldToNewEBCopiers;
2247
2252 std::map<std::pair<std::string, std::string>, Vector<Copier>> m_validToValidRealmCopiers;
2253
2258 std::map<std::pair<std::string, std::string>, Vector<Copier>> m_validToValidGhostRealmCopiers;
2259
2264 std::map<std::pair<std::string, std::string>, Vector<Copier>> m_validGhostToValidRealmCopiers;
2265
2270 std::map<std::pair<std::string, std::string>, Vector<Copier>> m_validGhostToValidGhostRealmCopiers;
2271
2275 GridGenerationMethod m_gridGenerationMethod;
2276
2280 BoxSorting m_boxSort;
2281
2285 RefCountedPtr<MultiFluidIndexSpace> m_multifluidIndexSpace;
2286
2290 CellCentroidInterpolation::Type m_cellCentroidInterpolationType;
2291
2295 EBCentroidInterpolation::Type m_ebCentroidInterpolationType;
2296
2300 IntVect m_numCells;
2301
2305 Real m_fillRatioBR;
2306
2310 RealVect m_probLo;
2311
2315 RealVect m_probHi;
2316
2320 int m_refRatio;
2321
2325 int m_verbosity;
2326
2330 int m_finestLevel;
2331
2335 int m_oldFinestLevel;
2336
2340 int m_maxAmrDepth;
2341
2345 int m_maxSimulationDepth;
2346
2350 int m_maxBlockSize;
2351
2355 int m_maxEbisBoxSize;
2356
2360 int m_bufferSizeBR;
2361
2365 int m_minBlockSize;
2366
2370 int m_ebMinBlockSize;
2371
2375 int m_ebMaxBlockSize;
2376
2380 int m_numEbGhostsCells;
2381
2385 int m_numGhostCells;
2386
2390 int m_numLsfGhostCells;
2391
2395 int m_multigridInterpOrder;
2396
2400 int m_multigridInterpRadius;
2401
2405 int m_multigridInterpWeight;
2406
2410 int m_redistributionRadius;
2411
2417 int m_mirrorBandRadius;
2418
2424 Real m_mirrorConditionTolerance;
2425
2431 Real m_mirrorCreaseTolerance;
2432
2439 Real m_mirrorMaxJacobian;
2440
2446 Real m_mirrorMinDenominator;
2447
2451 bool m_hasGrids;
2452
2456 bool m_hasRegridCopiers;
2457
2461 Vector<DisjointBoxLayout> m_grids;
2462
2466 Vector<ProblemDomain> m_domains;
2467
2471 Vector<int> m_refinementRatios;
2472
2476 Vector<Real> m_dx;
2477
2481 void
2482 defineRealms();
2483
2492 void
2493 buildGrids(const Vector<IntVectSet>& a_tags, const int a_lmin, const int a_hardcap = -1);
2494
2502 void
2503 buildGrids(const Vector<Vector<Box>>& a_boxes, const int a_lmin);
2504
2510 void
2511 defineGrids(Vector<Vector<Box>>& a_boxes, const int a_lmin);
2512
2516 void
2517 buildCopiers();
2518
2522 void
2523 parseProbLoHiCorners();
2524
2528 void
2529 parseGridGeneration();
2530
2534 void
2535 parseVerbosity();
2536
2540 void
2541 parseCoarsestLevelNumCells();
2542
2546 void
2547 parseMaxAmrDepth();
2548
2552 void
2553 parseMaxSimulationDepth();
2554
2558 void
2559 parseRefinementRatios();
2560
2564 void
2565 parseBrBufferSize();
2566
2570 void
2571 parseBrFillRatio();
2572
2576 void
2577 parseMaxBlockSize();
2578
2583 void
2584 parseMaxEbisBoxSize();
2585
2589 void
2590 parseEbBlockSizes();
2591
2595 void
2596 parseMinBlockSize();
2597
2602 void
2603 parseEbGhostCells();
2604
2608 void
2609 parseNumGhostCells();
2610
2614 void
2615 parseMultigridInterpolator();
2616
2620 void
2621 parseRedistributionRadius();
2622
2626 void
2627 parseMirrorDeposition();
2628
2632 void
2633 parseCellCentroidInterpolation();
2634
2638 void
2639 parseEBCentroidInterpolation();
2640
2651 void
2652 computeGradient(LevelData<EBCellFAB>& a_gradient,
2653 const LevelData<EBCellFAB>& a_phi,
2654 const std::string& a_realm,
2655 const phase::which_phase a_phase,
2656 const int a_lvl) const;
2657};
2658
2659#include <CD_NamespaceFooter.H>
2660
2661#include <CD_AmrMeshImplem.H>
2662
2663#endif
CD_AmrMeshImplem.H
Implementation of CD_AmrMesh.H.
Average
Average
Various averaging methods.
Definition CD_Average.H:25
BoxSorting
BoxSorting
Enum for sorting boxes.
Definition CD_BoxSorting.H:22
CoarseFineDeposition
CoarseFineDeposition
Coarse-fine deposition types (see CD_EBAMRParticleMesh for how these are handled).
Definition CD_CoarseFineDeposition.H:28
CD_ComputationalGeometry.H
Declaration of base class for defining geometries.
CD_CopyStrategy.H
Simple enum for distinguishing copying strategies.
CopyStrategy
CopyStrategy
Enum for distinguishing how we copy data Valid => valid region ValidGhost => valid+ghost region.
Definition CD_CopyStrategy.H:24
DepositionType
DepositionType
Deposition types.
Definition CD_DepositionType.H:24
CD_DomainFluxIFFABFactory.H
Declaration of factory class for DomainFluxIFFAB.
CD_DomainFluxIFFAB.H
Declaration of a BaseIFFAB wrapper that holds domain fluxes.
CD_EBAMRData.H
Class for holding data across EBAMR hierarchies.
CD_EBCoarAve.H
Declaration of conservative coarsening utility.
CD_EBReflux.H
Declaration of a class which can reflux over the coarse-fine interface.
CD_IrregularDeposition.H
Declaration of cut-cell deposition strategies.
IrregularDeposition
IrregularDeposition
How a deposition scheme treats the cut cells.
Definition CD_IrregularDeposition.H:36
CD_LoadBalancing.H
Declaration of a static class for various load balancing operations.
CD_MFLevelGrid.H
Declaration of a wrapper for wrapping multifluid EBLevelGrids.
CD_MultiFluidIndexSpace.H
Multi-fluid index space.
CD_ParticleContainer.H
Declaration of an AMR-hierarchy container that owns per-patch ParticleSoA leaves.
CD_ParticleGhostMask.H
Declaration of ParticleGhostMask, a per-box CSR lookup of particle ghost scatter targets.
AMRParticleGhostMask
Vector< RefCountedPtr< LayoutData< ParticleGhostMask > > > AMRParticleGhostMask
AMR-wide particle ghost-target lookup: one per-box CSR table per level, indexed by SOURCE level.
Definition CD_ParticleGhostMask.H:210
CD_Realm.H
Declaration of the Realm class.
AMRMask
Vector< RefCountedPtr< LevelData< BaseFab< bool > > > > AMRMask
Alias for cutting down on the typic of booleans defined over AMR grids.
Definition CD_Realm.H:33
AmrMesh
Class for handling spatial operations.
Definition CD_AmrMesh.H:46
AmrMesh::operator=
AmrMesh & operator=(const AmrMesh &a_other)=delete
Disallowed copy assignment.
AmrMesh::getTrivialParticleGhostMask
const AMRParticleGhostMask & getTrivialParticleGhostMask() const
Get a trivial (empty) particle ghost mask that scatters no particles.
Definition CD_AmrMesh.cpp:3650
AmrMesh::m_refRatio
int m_refRatio
Refinement ratio.
Definition CD_AmrMesh.H:2320
AmrMesh::getFaceIterator
Vector< RefCountedPtr< LayoutData< std::array< FaceIterator, SpaceDim > > > > & getFaceIterator(const std::string &a_realm, const phase::which_phase a_phase) const
Get face iterators over cut-cell faces in each valid grid box (FaceStop::SurroundingWithBoundary).
Definition CD_AmrMesh.cpp:3467
AmrMesh::depositGathered
void depositGathered(EBAMRCellData &a_meshData, const std::string &a_realm, const phase::which_phase &a_phase, const ParticleContainer< P, Traits > &a_particles, const DepositionType a_depositionType, const CoarseFineDeposition a_coarseFineDeposition, const IrregularDeposition a_irregularDeposition, CellGather a_cellGather)
Deposit a custom per-particle scalar (a_cellGather) of an SoA container on the mesh.
Definition CD_AmrMeshImplem.H:391
AmrMesh::parseRuntimeOptions
void parseRuntimeOptions()
Parse runtime options.
Definition CD_AmrMesh.cpp:988
AmrMesh::m_oldToNewCellCopiers
std::map< std::string, Vector< Copier > > m_oldToNewCellCopiers
Storage for copiers from the old grids to the new ones.
Definition CD_AmrMesh.H:2240
AmrMesh::registerOperator
void registerOperator(const std::string &a_operator, const std::string &a_realm, const phase::which_phase a_phase)
Register an operator over a realm and a phase.
Definition CD_AmrMesh.cpp:4077
AmrMesh::allocatePointer
void allocatePointer(Vector< RefCountedPtr< T > > &a_data) const
Allocate pointer but not any memory blocks.
Definition CD_AmrMeshImplem.H:268
AmrMesh::getSurfaceDeposition
EBAMRSurfaceDeposition & getSurfaceDeposition(const std::string &a_realm, const phase::which_phase a_phase) const
Get EBAMRSurfaceDeposition surface deposition operator.
Definition CD_AmrMesh.cpp:3877
AmrMesh::getMask
const AMRMask & getMask(const std::string &a_mask, const int a_buffer, const std::string &a_realm) const
Get a registered mask.
Definition CD_AmrMesh.cpp:3536
AmrMesh::getRealms
std::vector< std::string > getRealms() const
Get the name of all Realms.
Definition CD_AmrMesh.cpp:4203
AmrMesh::getProbHi
RealVect getProbHi() const
Get upper-right corner of computational domain.
Definition CD_AmrMesh.cpp:3160
AmrMesh::parseBrBufferSize
void parseBrBufferSize()
Parse buffer size for Berger-Rigoutsous grid algorithm.
Definition CD_AmrMesh.cpp:2745
AmrMesh::getFinestDx
Real getFinestDx() const
Get resolution on the finest grid level.
Definition CD_AmrMesh.cpp:3333
AmrMesh::getMaxBlockSize
int getMaxBlockSize() const
Get maximum permitted block size.
Definition CD_AmrMesh.cpp:3270
AmrMesh::registerRealm
void registerRealm(const std::string &a_realm)
Register a new realm.
Definition CD_AmrMesh.cpp:4064
AmrMesh::getBaseImplicitFunction
const RefCountedPtr< BaseIF > & getBaseImplicitFunction(const phase::which_phase a_phase) const
Get implicit function for a specific phase.
Definition CD_AmrMesh.cpp:3366
AmrMesh::AmrMesh
AmrMesh(const AmrMesh &&a_other)=delete
Disallowed move constructor.
AmrMesh::transferCoveredParticlesIF
void transferCoveredParticlesIF(ParticleContainer< P, Traits > &a_particlesFrom, ParticleContainer< P, Traits > &a_particlesTo, const phase::which_phase &a_phase, const Real a_tolerance) const
Transfer SoA particles inside the EB (implicit-function test) from one container to another: f(x) > a...
Definition CD_AmrMeshImplem.H:673
AmrMesh::m_fillRatioBR
Real m_fillRatioBR
Fill ratio.
Definition CD_AmrMesh.H:2305
AmrMesh::allocate
void allocate(ParticleContainer< P, Traits > &a_container, const std::string &a_realm) const
Allocate a struct-of-arrays particle container on the given realm.
Definition CD_AmrMeshImplem.H:241
AmrMesh::getFinestDomain
ProblemDomain getFinestDomain() const
Get finest domain.
Definition CD_AmrMesh.cpp:3322
AmrMesh::parseCellCentroidInterpolation
void parseCellCentroidInterpolation()
Parse centroid interpolation stencils.
Definition CD_AmrMesh.cpp:2967
AmrMesh::getCoarseAverage
Vector< RefCountedPtr< EBCoarAve > > & getCoarseAverage(const std::string &a_realm, const phase::which_phase a_phase) const
Get the coarsening utility.
Definition CD_AmrMesh.cpp:3894
AmrMesh::getLevelTiles
const Vector< RefCountedPtr< LevelTiles > > & getLevelTiles(const std::string &a_realm) const
Get the tiled space representation.
Definition CD_AmrMesh.cpp:3568
AmrMesh::depositWeight
void depositWeight(EBAMRCellData &a_meshData, const std::string &a_realm, const phase::which_phase &a_phase, const ParticleContainer< P, Traits > &a_particles, const DepositionType a_depositionType, const CoarseFineDeposition a_coarseFineDeposition, const IrregularDeposition a_irregularDeposition)
Deposit the SoA container's weight column on the mesh (all coarse-fine strategies).
Definition CD_AmrMeshImplem.H:371
AmrMesh::m_oldFinestLevel
int m_oldFinestLevel
Finest level before a regrid.
Definition CD_AmrMesh.H:2335
AmrMesh::copyData
void copyData(EBAMRData< T > &a_dst, const EBAMRData< T > &a_src, const CopyStrategy &a_toRegion=CopyStrategy::Valid, const CopyStrategy &a_fromRegion=CopyStrategy::Valid) const noexcept
Method for copying from a source container to a destination container. User supplies information abou...
Definition CD_AmrMeshImplem.H:23
AmrMesh::getProxyGrids
const Vector< DisjointBoxLayout > & getProxyGrids() const
Get the "proxy" grids in AmrMesh.
Definition CD_AmrMesh.cpp:3389
AmrMesh::interpGhostMG
void interpGhostMG(MFAMRCellData &a_data, const std::string &a_realm) const
Interpolate ghost cells over a realm and phase.
Definition CD_AmrMesh.cpp:2121
AmrMesh::m_numCells
IntVect m_numCells
Coarsest box where we compute.
Definition CD_AmrMesh.H:2300
AmrMesh::postRegrid
void postRegrid()
Run post-regrid operations.
Definition CD_AmrMesh.cpp:1081
AmrMesh::parseMaxAmrDepth
void parseMaxAmrDepth()
Parse the maximum permitted AMR depth.
Definition CD_AmrMesh.cpp:2575
AmrMesh::m_probHi
RealVect m_probHi
Domain simulation corner.
Definition CD_AmrMesh.H:2315
AmrMesh::registerParticleGhostMask
void registerParticleGhostMask(const std::string &a_realm, const int a_width)
Register a particle ghost-mask width on a realm so it is (re)built at every regrid.
Definition CD_AmrMesh.cpp:3584
AmrMesh::getValidCells
const AMRMask & getValidCells(const std::string &a_realm) const
Get a map of all valid cells on a specified realm.
Definition CD_AmrMesh.cpp:3552
AmrMesh::m_grids
Vector< DisjointBoxLayout > m_grids
Grids.
Definition CD_AmrMesh.H:2461
AmrMesh::m_multifluidIndexSpace
RefCountedPtr< MultiFluidIndexSpace > m_multifluidIndexSpace
MultiFluidIndexSpace.
Definition CD_AmrMesh.H:2285
AmrMesh::interpolateWeight
void interpolateWeight(ParticleContainer< P, Traits > &a_particles, const std::string &a_realm, const phase::which_phase &a_phase, const EBAMRCellData &a_meshScalarField, const DepositionType a_interpType, const bool a_forceIrregNGP) const
Interpolate a mesh scalar field onto the SoA container's weight column.
Definition CD_AmrMeshImplem.H:441
AmrMesh::m_probLo
RealVect m_probLo
Domain simulation corner.
Definition CD_AmrMesh.H:2310
AmrMesh::m_mirrorBandRadius
int m_mirrorBandRadius
Mirror deposition: half-width, in cells, of the band around the embedded boundary that reflects.
Definition CD_AmrMesh.H:2417
AmrMesh::nonConservativeDivergence
void nonConservativeDivergence(EBAMRIVData &a_nonConsDivF, const EBAMRCellData &a_kappaDivF, const std::string &a_realm, const phase::which_phase &a_phase) const noexcept
Compute a non-conservative divergence.
Definition CD_AmrMesh.cpp:3997
AmrMesh::m_bufferSizeBR
int m_bufferSizeBR
Set buffer size.
Definition CD_AmrMesh.H:2360
AmrMesh::intersectParticlesBisectIF
void intersectParticlesBisectIF(ParticleContainer< P, Traits > &a_activeParticles, ParticleContainer< P, Traits > &a_ebParticles, ParticleContainer< P, Traits > &a_domainParticles, const phase::which_phase a_phase, const Real a_bisectionStep, const bool a_deleteParticles, const std::function< void(ParticleSoA< P, Traits > &, std::size_t)> &a_nonDeletionModifier) const noexcept
SoA bisection-based particle intersection algorithm.
Definition CD_AmrMeshImplem.H:1053
AmrMesh::setCoarsestGrid
void setCoarsestGrid(const IntVect &a_nCells)
Set the coarsest grid cells.
Definition CD_AmrMesh.cpp:2534
AmrMesh::parseMaxSimulationDepth
void parseMaxSimulationDepth()
Set maximum simulation depth.
Definition CD_AmrMesh.cpp:2594
AmrMesh::getMaxSimulationDepth
int getMaxSimulationDepth() const
Get maximum permitted simulation depth.
Definition CD_AmrMesh.cpp:3193
AmrMesh::m_maxSimulationDepth
int m_maxSimulationDepth
Maximum allowed depth for simulation.
Definition CD_AmrMesh.H:2345
AmrMesh::setFinestLevel
void setFinestLevel(const int a_finestLevel)
Set the finest level.
Definition CD_AmrMesh.cpp:2651
AmrMesh::~AmrMesh
virtual ~AmrMesh()
Destructor.
AmrMesh::getGrids
const Vector< DisjointBoxLayout > & getGrids(const std::string &a_realm) const
Get the grids.
Definition CD_AmrMesh.cpp:3400
AmrMesh::m_multigridInterpRadius
int m_multigridInterpRadius
Multigrid interpolation radius.
Definition CD_AmrMesh.H:2400
AmrMesh::buildDomains
void buildDomains()
Build domains.
Definition CD_AmrMesh.cpp:1024
AmrMesh::m_mirrorCreaseTolerance
Real m_mirrorCreaseTolerance
Mirror deposition: largest permitted dimensionless residual of the shape-operator fit.
Definition CD_AmrMesh.H:2431
AmrMesh::getParticleGhostMask
const AMRParticleGhostMask & getParticleGhostMask(const std::string &a_realm, const int a_width) const
Get the same-level particle ghost mask on a realm for a registered width.
Definition CD_AmrMesh.cpp:3600
AmrMesh::m_gridGenerationMethod
GridGenerationMethod m_gridGenerationMethod
Grid generation method.
Definition CD_AmrMesh.H:2275
AmrMesh::getMinBlockSize
int getMinBlockSize() const
Get the minimum block size (i.e. the smallest possible box / tile size).
Definition CD_AmrMesh.cpp:3259
AmrMesh::getMirrorSurfaceData
const EBAMRCellData & getMirrorSurfaceData(const std::string &a_realm, const phase::which_phase a_phase) const
Get the per-band-cell surface data used by mirrored deposition, for a Realm and phase.
Definition CD_AmrMesh.cpp:3814
AmrMesh::parseRefinementRatios
void parseRefinementRatios()
Parse refinement ratios.
Definition CD_AmrMesh.cpp:2613
AmrMesh::m_refinementRatios
Vector< int > m_refinementRatios
AMR resolutions.
Definition CD_AmrMesh.H:2471
AmrMesh::getFaceIteratorNoBoundary
Vector< RefCountedPtr< LayoutData< std::array< FaceIterator, SpaceDim > > > > & getFaceIteratorNoBoundary(const std::string &a_realm, const phase::which_phase a_phase) const
Get face iterators over cut-cell faces in each valid grid box (FaceStop::SurroundingNoBoundary).
Definition CD_AmrMesh.cpp:3484
AmrMesh::getNotCoveredCells
const EBAMRCellData & getNotCoveredCells(const std::string &a_realm, const phase::which_phase a_phase) const
Get the non-covered-cell mask (1 in regular/irregular cells, 0 in covered cells) for a Realm and phas...
Definition CD_AmrMesh.cpp:3780
AmrMesh::m_verbosity
int m_verbosity
Verbosity.
Definition CD_AmrMesh.H:2325
AmrMesh::getMirrorMaxJacobian
Real getMirrorMaxJacobian() const
Get the largest Jacobian magnitude the mirror pass will trust.
Definition CD_AmrMesh.cpp:3848
AmrMesh::getMultiCutVofIterator
Vector< RefCountedPtr< LayoutData< VoFIterator > > > & getMultiCutVofIterator(const std::string &a_realm, const phase::which_phase a_phase) const
Get vof iterators restricted to multiply-cut cells for a Realm and phase.
Definition CD_AmrMesh.cpp:3450
AmrMesh::interpToCentroids
void interpToCentroids(EBAMRCellData &a_data, const std::string &a_realm, const phase::which_phase a_phase) const noexcept
Interpolate data to centroids on realm and phase.
Definition CD_AmrMesh.cpp:2356
AmrMesh::getIrregularCells
const EBAMRCellData & getIrregularCells(const std::string &a_realm, const phase::which_phase a_phase) const
Get the irregular-cell mask (value 1 in irregular cells, 0 elsewhere) for a Realm and phase.
Definition CD_AmrMesh.cpp:3797
AmrMesh::m_hasRegridCopiers
bool m_hasRegridCopiers
Has regrid copiers or not.
Definition CD_AmrMesh.H:2456
AmrMesh::m_minBlockSize
int m_minBlockSize
Blocking factor.
Definition CD_AmrMesh.H:2365
AmrMesh::m_multigridInterpOrder
int m_multigridInterpOrder
Multigrid interpolation order.
Definition CD_AmrMesh.H:2395
AmrMesh::getParticleGhostMaskFineToCoar
const AMRParticleGhostMask & getParticleGhostMaskFineToCoar(const std::string &a_realm, const int a_width) const
Get the fine-to-coarse particle ghost mask on a realm for a registered width.
Definition CD_AmrMesh.cpp:3616
AmrMesh::m_validToValidRealmCopiers
std::map< std::pair< std::string, std::string >, Vector< Copier > > m_validToValidRealmCopiers
Map for copying between various Realms. First index is the "from" realm and second index is the "to" ...
Definition CD_AmrMesh.H:2252
AmrMesh::m_validGhostToValidRealmCopiers
std::map< std::pair< std::string, std::string >, Vector< Copier > > m_validGhostToValidRealmCopiers
Map for copying between various Realms. First index is the "from" realm and second index is the "to" ...
Definition CD_AmrMesh.H:2264
AmrMesh::parseNumGhostCells
void parseNumGhostCells()
Parse the number of ghost cells.
Definition CD_AmrMesh.cpp:2873
AmrMesh::getParticleGhostMaskCoarToFine
const AMRParticleGhostMask & getParticleGhostMaskCoarToFine(const std::string &a_realm, const int a_width) const
Get the coarse-to-fine particle ghost mask on a realm for a registered width.
Definition CD_AmrMesh.cpp:3633
AmrMesh::sanityCheck
void sanityCheck() const
Do a sanity check to make sure everything is set up correctly.
Definition CD_AmrMesh.cpp:3053
AmrMesh::getMirrorHasCutCells
const Vector< int > & getMirrorHasCutCells(const std::string &a_realm, const phase::which_phase a_phase) const
Get, per level, whether that level has any cut cell anywhere in the domain.
Definition CD_AmrMesh.cpp:3831
AmrMesh::m_numGhostCells
int m_numGhostCells
Number of ghost cells.
Definition CD_AmrMesh.H:2385
AmrMesh::getRedistributionOp
Vector< RefCountedPtr< EBFluxRedistribution > > & getRedistributionOp(const std::string &a_realm, const phase::which_phase a_phase) const
Get the redistribution operators.
Definition CD_AmrMesh.cpp:3962
AmrMesh::buildGrids
void buildGrids(const Vector< IntVectSet > &a_tags, const int a_lmin, const int a_hardcap=-1)
Build new internal AMR grids.
Definition CD_AmrMesh.cpp:1189
AmrMesh::parseVerbosity
void parseVerbosity()
Parse the verbosity for AmrMesh.
Definition CD_AmrMesh.cpp:2545
AmrMesh::m_maxBlockSize
int m_maxBlockSize
Max box size.
Definition CD_AmrMesh.H:2350
AmrMesh::GridGenerationMethod
GridGenerationMethod
Enum for having understandable notation for grid generation.
Definition CD_AmrMesh.H:2216
AmrMesh::m_validGhostToValidGhostRealmCopiers
std::map< std::pair< std::string, std::string >, Vector< Copier > > m_validGhostToValidGhostRealmCopiers
Map for copying between various Realms. First index is the "from" realm and second index is the "to" ...
Definition CD_AmrMesh.H:2270
AmrMesh::transferCoveredParticlesDiscrete
void transferCoveredParticlesDiscrete(ParticleContainer< P, Traits > &a_particlesFrom, ParticleContainer< P, Traits > &a_particlesTo, const phase::which_phase &a_phase, const Real a_tolerance) const
Transfer SoA particles inside the EB using discrete (EBISBox) information from one container to anoth...
Definition CD_AmrMeshImplem.H:738
AmrMesh::harmonicAverage
void harmonicAverage(MFAMRCellData &a_data, const std::string &a_realm) const
Harmonic coarsening of multifluid data.
Definition CD_AmrMesh.cpp:1636
AmrMesh::removeCoveredParticlesVoxels
void removeCoveredParticlesVoxels(ParticleContainer< P, Traits > &a_particles, const phase::which_phase &a_phase) const
Remove SoA particles that live in covered cells (voxel test).
Definition CD_AmrMeshImplem.H:618
AmrMesh::getEbCf
bool getEbCf() const
Check if mesh has an EBCF.
Definition CD_AmrMesh.cpp:4053
AmrMesh::getParticleGhostExposure
const AMRMask & getParticleGhostExposure(const std::string &a_realm, const int a_width) const
Get the particle boundary-exposure mask on a realm for a registered width.
Definition CD_AmrMesh.cpp:3663
AmrMesh::parseMinBlockSize
void parseMinBlockSize()
Parse the B-R blocking factor. For tiled mesh refinement this parses the tile size.
Definition CD_AmrMesh.cpp:2806
AmrMesh::m_dx
Vector< Real > m_dx
Level resolutions.
Definition CD_AmrMesh.H:2476
AmrMesh::m_mirrorConditionTolerance
Real m_mirrorConditionTolerance
Mirror deposition: smallest permitted eigenvalue ratio of U^T U in the shape-operator fit.
Definition CD_AmrMesh.H:2424
AmrMesh::m_numEbGhostsCells
int m_numEbGhostsCells
Number of ghost cells to use for eb stuff.
Definition CD_AmrMesh.H:2380
AmrMesh::transferIrregularParticles
void transferIrregularParticles(ParticleContainer< P, Traits > &a_dstParticles, ParticleContainer< P, Traits > &a_srcParticles, const phase::which_phase a_phase) const noexcept
Transfer SoA particles that are on the covered side of the EB to a different container.
Definition CD_AmrMeshImplem.H:1219
AmrMesh::parseOptions
void parseOptions()
Parse options. Called during the constructor.
Definition CD_AmrMesh.cpp:952
AmrMesh::buildCopiers
void buildCopiers()
Build copiers for copying between realms.
Definition CD_AmrMesh.cpp:1380
AmrMesh::getProbLo
RealVect getProbLo() const
Get lower-left corner of computational domain.
Definition CD_AmrMesh.cpp:3149
AmrMesh::m_boxSort
BoxSorting m_boxSort
Box sorting.
Definition CD_AmrMesh.H:2280
AmrMesh::setMultifluidIndexSpace
void setMultifluidIndexSpace(const RefCountedPtr< MultiFluidIndexSpace > &a_multiFluidIndexSpace)
Sets multifluid index space.
Definition CD_AmrMesh.cpp:928
AmrMesh::m_maxAmrDepth
int m_maxAmrDepth
Maximum amr depth.
Definition CD_AmrMesh.H:2340
AmrMesh::defineRealms
void defineRealms()
Define Realms.
Definition CD_AmrMesh.cpp:4110
AmrMesh::m_finestLevel
int m_finestLevel
Finest level.
Definition CD_AmrMesh.H:2330
AmrMesh::getEBLevelGridCoFi
const Vector< RefCountedPtr< EBLevelGrid > > & getEBLevelGridCoFi(const std::string &a_realm, const phase::which_phase a_phase) const
Get the coarsened fine EBLevelGrid for a Realm and phase.
Definition CD_AmrMesh.cpp:3696
AmrMesh::removeCoveredParticlesIF
void removeCoveredParticlesIF(ParticleContainer< P, Traits > &a_particles, const phase::which_phase &a_phase, const Real a_tolerance) const
Remove SoA particles that fall inside the EB (implicit-function test): f(x) > a_tolerance*dx.
Definition CD_AmrMeshImplem.H:479
AmrMesh::reallocate
void reallocate(EBAMRCellData &a_data, const phase::which_phase a_phase, const int a_lmin) const
Reallocate data.
Definition CD_AmrMesh.cpp:614
AmrMesh::m_mirrorMaxJacobian
Real m_mirrorMaxJacobian
Mirror deposition: largest Jacobian magnitude that will be trusted.
Definition CD_AmrMesh.H:2439
AmrMesh::m_oldToNewEBCopiers
std::map< std::string, Vector< Copier > > m_oldToNewEBCopiers
Storage for copiers from the old grids to the new ones.
Definition CD_AmrMesh.H:2246
AmrMesh::getEBLevelGrid
const Vector< RefCountedPtr< EBLevelGrid > > & getEBLevelGrid(const std::string &a_realm, const phase::which_phase a_phase) const
Get the EBLevelGrid for a Realm and phase.
Definition CD_AmrMesh.cpp:3679
AmrMesh::m_baseif
std::map< phase::which_phase, RefCountedPtr< BaseIF > > m_baseif
Implicit functions.
Definition CD_AmrMesh.H:2229
AmrMesh::regridRealm
void regridRealm(const std::string &a_realm, const Vector< Vector< int > > &a_procs, const Vector< Vector< Box > > &a_boxes, const int a_lmin)
Regrid a realm. This generates the grids for the realm, but does not do the operators on the realm.
Definition CD_AmrMesh.cpp:4143
AmrMesh::getNumberOfGhostCells
int getNumberOfGhostCells() const
Get the default number of ghost cells.
Definition CD_AmrMesh.cpp:3226
AmrMesh::queryRealm
bool queryRealm(const std::string &a_realm) const
Query if a realm exists.
Definition CD_AmrMesh.cpp:4036
AmrMesh::getLevelset
const EBAMRFAB & getLevelset(const std::string &a_realm, const phase::which_phase a_phase) const
Get levelset function, allocated over a grid for a Realm and phase.
Definition CD_AmrMesh.cpp:3730
AmrMesh::m_ebMaxBlockSize
int m_ebMaxBlockSize
Largest box the geometry grids are tiled with.
Definition CD_AmrMesh.H:2375
AmrMesh::regridAmr
void regridAmr(const Vector< IntVectSet > &a_tags, const int a_lmin, const int a_hardcap=-1)
Regrid AMR. This versions generates the grids and Realms, but not the operator.
Definition CD_AmrMesh.cpp:1119
AmrMesh::operator=
AmrMesh & operator=(const AmrMesh &&a_other)=delete
Disallowed move assignment.
AmrMesh::parseCoarsestLevelNumCells
void parseCoarsestLevelNumCells()
Parse the coarsest domain grid.
Definition CD_AmrMesh.cpp:2558
AmrMesh::getEBIndexSpace
RefCountedPtr< EBIndexSpace > & getEBIndexSpace(const phase::which_phase a_phase)
Get EBIndexSpace corresponding to a particular phase.
Definition CD_AmrMesh.H:2206
AmrMesh::arithmeticAverage
void arithmeticAverage(MFAMRCellData &a_data, const std::string &a_realm) const
Arithmetic coarsening of multifluid data.
Definition CD_AmrMesh.cpp:1625
AmrMesh::parseRedistributionRadius
void parseRedistributionRadius()
Parse the default redistribution radius.
Definition CD_AmrMesh.cpp:2920
AmrMesh::intersectParticlesRaycastIF
void intersectParticlesRaycastIF(ParticleContainer< P, Traits > &a_activeParticles, ParticleContainer< P, Traits > &a_ebParticles, ParticleContainer< P, Traits > &a_domainParticles, const phase::which_phase a_phase, const Real a_tolerance, const bool a_deleteParticles, const std::function< void(ParticleSoA< P, Traits > &, std::size_t)> &a_nonDeletionModifier) const noexcept
SoA ray-casting particle intersection algorithm.
Definition CD_AmrMeshImplem.H:885
AmrMesh::setGrids
void setGrids(const Vector< Vector< Box > > &a_boxes, const std::map< std::string, Vector< Vector< long int > > > &a_realmsAndLoads)
Set grids from boxes and computational loads.
Definition CD_AmrMesh.cpp:2664
AmrMesh::getFaceIteratorWithTangentialGhosts
Vector< RefCountedPtr< LayoutData< std::array< FaceIterator, SpaceDim > > > > & getFaceIteratorWithTangentialGhosts(const std::string &a_realm, const phase::which_phase a_phase) const
Get per-direction face iterators covering cut-cell faces that reach into the tangential ghost layer.
Definition CD_AmrMesh.cpp:3501
AmrMesh::getEbMinBlockSize
int getEbMinBlockSize() const
Get the smallest box the geometry grids are tiled with.
Definition CD_AmrMesh.cpp:3204
AmrMesh::m_validToValidGhostRealmCopiers
std::map< std::pair< std::string, std::string >, Vector< Copier > > m_validToValidGhostRealmCopiers
Map for copying between various Realms. First index is the "from" realm and second index is the "to" ...
Definition CD_AmrMesh.H:2258
AmrMesh::computeGradient
void computeGradient(EBAMRCellData &a_gradient, const EBAMRCellData &a_phi, const std::string &a_realm, const phase::which_phase a_phase) const
Compute cell-centered gradient over an AMR hierarchy.
Definition CD_AmrMesh.cpp:1445
AmrMesh::getDx
const Vector< Real > & getDx() const
Get spatial resolutions.
Definition CD_AmrMesh.cpp:3344
AmrMesh::getBrBuffer
int getBrBuffer() const
Return buffer for B-R mesh refinement algorithm.
Definition CD_AmrMesh.cpp:3281
AmrMesh::getMirrorMinDenominator
Real getMirrorMinDenominator() const
Get the smallest Jacobian denominator the mirror pass will trust.
Definition CD_AmrMesh.cpp:3854
AmrMesh::getMultiCutFaceIterator
Vector< RefCountedPtr< LayoutData< std::array< FaceIterator, SpaceDim > > > > & getMultiCutFaceIterator(const std::string &a_realm, const phase::which_phase a_phase) const
Get face iterators restricted to multiply-cut faces in each valid grid box.
Definition CD_AmrMesh.cpp:3519
AmrMesh::getParticleMesh
EBAMRParticleMesh & getParticleMesh(const std::string &a_realm, const phase::which_phase a_phase) const
Get EBAMRParticleMesh operator.
Definition CD_AmrMesh.cpp:3860
AmrMesh::getEBISLayout
const Vector< EBISLayout > & getEBISLayout(const std::string &a_realm, const phase::which_phase a_phase) const
Get EBISLayouts for a Realm and phase.
Definition CD_AmrMesh.cpp:3416
AmrMesh::defineGrids
void defineGrids(Vector< Vector< Box > > &a_boxes, const int a_lmin)
Load balance new boxes and define m_grids from them, for levels a_lmin through m_finestLevel.
Definition CD_AmrMesh.cpp:1321
AmrMesh::getMaxBoxSize
int getMaxBoxSize() const
Deprecated alias for getMaxBlockSize().
Definition CD_AmrMesh.H:1700
AmrMesh::m_realms
std::map< std::string, RefCountedPtr< Realm > > m_realms
These are all the Realms.
Definition CD_AmrMesh.H:2224
AmrMesh::getMaxEbisBoxSize
int getMaxEbisBoxSize() const
Get maximum box size for EBIS generation.
Definition CD_AmrMesh.cpp:3292
AmrMesh::AmrMesh
AmrMesh()
Default constructor.
Definition CD_AmrMesh.cpp:32
AmrMesh::getEbMaxBlockSize
int getEbMaxBlockSize() const
Get the largest box the geometry grids are tiled with.
Definition CD_AmrMesh.cpp:3215
AmrMesh::parseEbGhostCells
void parseEbGhostCells()
Parse number of ghost cells for eb stuff.
Definition CD_AmrMesh.cpp:2829
AmrMesh::parseMultigridInterpolator
void parseMultigridInterpolator()
Parse settings for the multigrid interpolator.
Definition CD_AmrMesh.cpp:2895
AmrMesh::interpolateParticles
void interpolateParticles(ParticleContainer< P, Traits > &a_particles, const std::string &a_realm, const phase::which_phase &a_phase, const EBAMRCellData &a_meshField, const DepositionType a_interpType, const bool a_forceIrregNGP) const
Interpolate a mesh field onto one or more SoA payload columns.
Definition CD_AmrMeshImplem.H:460
AmrMesh::slice
EBAMRCellData slice(EBAMRCellData &a_original, const Interval a_variables) const noexcept
Slice cell-centered data in order to fetch a subset of components.
Definition CD_AmrMesh.cpp:46
AmrMesh::getRefinementRatio
int getRefinementRatio(const int a_level1, const int a_level2) const
Get refinement factor between two levels.
Definition CD_AmrMesh.cpp:3303
AmrMesh::registerMask
void registerMask(const std::string &a_mask, const int a_buffer, const std::string &a_realm)
Register a boolean mask over a realm.
Definition CD_AmrMesh.cpp:4094
AmrMesh::getRegularCells
const EBAMRCellData & getRegularCells(const std::string &a_realm, const phase::which_phase a_phase) const
Get the regular-cell mask (value 1 in regular cells, 0 elsewhere) for a Realm and phase.
Definition CD_AmrMesh.cpp:3746
AmrMesh::depositParticles
void depositParticles(EBAMRIVData &a_meshData, const std::string &a_realm, const phase::which_phase &a_phase, const ParticleContainer< P, Traits > &a_particles) const noexcept
Deposit the weight column of an SoA particle container onto the surface (EB).
Definition CD_AmrMeshImplem.H:351
AmrMesh::getMultigridInterpolator
Vector< RefCountedPtr< EBMultigridInterpolator > > & getMultigridInterpolator(const std::string &a_realm, const phase::which_phase a_phase) const
Get multigrid interpolation utility.
Definition CD_AmrMesh.cpp:3911
AmrMesh::interpToEB
void interpToEB(EBAMRIVData &a_centroidData, const EBAMRCellData &a_cellData, const std::string &a_realm, const phase::which_phase a_phase) const noexcept
Interpolate data to EB centroids on realm and phase.
Definition CD_AmrMesh.cpp:2465
AmrMesh::remapToNewGrids
void remapToNewGrids(ParticleContainer< P, Traits > &a_particles, const int a_lmin, const int a_newFinestLevel) const noexcept
Regrid a struct-of-arrays particle container to new grids.
Definition CD_AmrMeshImplem.H:327
AmrMesh::interpGhostPwl
void interpGhostPwl(MFAMRCellData &a_data, const std::string &a_realm) const
Interpolate ghost cells over a realm and phase. This uses piecewise linear interpolation (with limite...
Definition CD_AmrMesh.cpp:2060
AmrMesh::getBlockingFactor
int getBlockingFactor() const
Deprecated alias for getMinBlockSize().
Definition CD_AmrMesh.H:1682
AmrMesh::parseMaxBlockSize
void parseMaxBlockSize()
Parse the maximum permitted box size.
Definition CD_AmrMesh.cpp:2703
AmrMesh::m_cellCentroidInterpolationType
CellCentroidInterpolation::Type m_cellCentroidInterpolationType
Interpolation type for cell to cell centroid interpolation.
Definition CD_AmrMesh.H:2290
AmrMesh::parseEBCentroidInterpolation
void parseEBCentroidInterpolation()
Parse EB interpolation (or extrapolation) stencils.
Definition CD_AmrMesh.cpp:3010
AmrMesh::getMFLevelGrid
const Vector< RefCountedPtr< MFLevelGrid > > & getMFLevelGrid(const std::string &a_realm) const
Get EBISLayouts for a Realm.
Definition CD_AmrMesh.cpp:3713
AmrMesh::m_multigridInterpWeight
int m_multigridInterpWeight
Multigrid interpolation weights.
Definition CD_AmrMesh.H:2405
AmrMesh::m_oldGrids
std::map< std::string, Vector< DisjointBoxLayout > > m_oldGrids
Old grids.
Definition CD_AmrMesh.H:2234
AmrMesh::m_ebCentroidInterpolationType
EBCentroidInterpolation::Type m_ebCentroidInterpolationType
Interpolation type for cell to EB centroid interpolation.
Definition CD_AmrMesh.H:2295
AmrMesh::getVofIterator
Vector< RefCountedPtr< LayoutData< VoFIterator > > > & getVofIterator(const std::string &a_realm, const phase::which_phase a_phase) const
Get VoF iterators covering all cut-cells (singly- and multiply-cut) for a Realm and phase.
Definition CD_AmrMesh.cpp:3433
AmrMesh::getCoveredCells
const EBAMRCellData & getCoveredCells(const std::string &a_realm, const phase::which_phase a_phase) const
Get the covered-cell mask (value 1 in covered cells, 0 elsewhere) for a Realm and phase.
Definition CD_AmrMesh.cpp:3763
AmrMesh::preRegrid
void preRegrid()
Run pre-regrid operations.
Definition CD_AmrMesh.cpp:1049
AmrMesh::average
void average(MFAMRCellData &a_data, const std::string &a_realm, const Average &a_average) const
Average multifluid data over a specified realm.
Definition CD_AmrMesh.cpp:1585
AmrMesh::getFluxRegister
Vector< RefCountedPtr< EBReflux > > & getFluxRegister(const std::string &a_realm, const phase::which_phase a_phase) const
Get flux register.
Definition CD_AmrMesh.cpp:3945
AmrMesh::AmrMesh
AmrMesh(const AmrMesh &a_other)=delete
Disallowed copy constructor.
AmrMesh::parseBrFillRatio
void parseBrFillRatio()
Parse the Berger-Rigoutsos fill ratio.
Definition CD_AmrMesh.cpp:2635
AmrMesh::m_domains
Vector< ProblemDomain > m_domains
Problem domains.
Definition CD_AmrMesh.H:2466
AmrMesh::parseProbLoHiCorners
void parseProbLoHiCorners()
Parse the low/high corners of the computational domain.
Definition CD_AmrMesh.cpp:1006
AmrMesh::parseGridGeneration
void parseGridGeneration()
Parse the grid generation algorithm.
Definition CD_AmrMesh.cpp:2764
AmrMesh::getFineInterp
Vector< RefCountedPtr< EBCoarseToFineInterp > > & getFineInterp(const std::string &a_realm, const phase::which_phase a_phase) const
Get interpolator.
Definition CD_AmrMesh.cpp:3928
AmrMesh::interpToNewGrids
void interpToNewGrids(MFAMRCellData &a_newData, const MFAMRCellData &a_oldData, const int a_lmin, const int a_oldFinestLevel, const int a_newFinestLevel, const EBCoarseToFineInterp::Type a_type)
Interpolate data to new grids.
Definition CD_AmrMesh.cpp:2179
AmrMesh::parseMaxEbisBoxSize
void parseMaxEbisBoxSize()
Parse the maximum permitted box size.
Definition CD_AmrMesh.cpp:2726
AmrMesh::alias
void alias(Vector< T * > &a_alias, const Vector< RefCountedPtr< T > > &a_data) const
Turn smart-pointer data structure into regular-pointer data structure.
Definition CD_AmrMeshImplem.H:213
AmrMesh::m_mirrorMinDenominator
Real m_mirrorMinDenominator
Mirror deposition: smallest Jacobian denominator that will be trusted.
Definition CD_AmrMesh.H:2446
AmrMesh::m_hasGrids
bool m_hasGrids
Has grids or not.
Definition CD_AmrMesh.H:2451
AmrMesh::deallocate
void deallocate(Vector< T * > &a_data) const
Deallocate data.
Definition CD_AmrMeshImplem.H:165
AmrMesh::getMaxAmrDepth
int getMaxAmrDepth() const
Get maximum permitted amr depth.
Definition CD_AmrMesh.cpp:3182
AmrMesh::transferCoveredParticlesVoxels
void transferCoveredParticlesVoxels(ParticleContainer< P, Traits > &a_particlesFrom, ParticleContainer< P, Traits > &a_particlesTo, const phase::which_phase &a_phase) const
Transfer SoA particles that live in covered cells (voxel test) from one container to another.
Definition CD_AmrMeshImplem.H:825
AmrMesh::conservativeAverage
void conservativeAverage(MFAMRCellData &a_data, const std::string &a_realm) const
Conservative coarsening of multifluid data.
Definition CD_AmrMesh.cpp:1647
AmrMesh::m_ebMinBlockSize
int m_ebMinBlockSize
Smallest box the geometry grids are tiled with.
Definition CD_AmrMesh.H:2370
AmrMesh::getRefinementRatios
const Vector< int > & getRefinementRatios() const
Get refinement ratios.
Definition CD_AmrMesh.cpp:3355
AmrMesh::regridOperators
void regridOperators(const int a_lmin)
Regrid AMR operators. This is done for all realms.
Definition CD_AmrMesh.cpp:1158
AmrMesh::interpGhost
void interpGhost(EBAMRCellData &a_data, const std::string &a_realm, const phase::which_phase a_phase) const
Interpolate ghost vectors over a realm, using the default ghost cell interpolation method.
Definition CD_AmrMesh.cpp:1976
AmrMesh::getRedistributionRadius
int getRedistributionRadius() const
Get default redistribution radius.
Definition CD_AmrMesh.cpp:3248
AmrMesh::getBoxSorting
BoxSorting getBoxSorting() const
Get box sorting method.
Definition CD_AmrMesh.cpp:4221
AmrMesh::removeCoveredParticlesDiscrete
void removeCoveredParticlesDiscrete(ParticleContainer< P, Traits > &a_particles, const phase::which_phase &a_phase, const Real a_tolerance) const
Remove SoA particles inside the EB using discrete (EBISBox) information: covered cells,...
Definition CD_AmrMeshImplem.H:538
AmrMesh::parseEbBlockSizes
void parseEbBlockSizes()
Parse the tile and super-tile the geometry grids are built with.
Definition CD_AmrMesh.cpp:2846
AmrMesh::parseMirrorDeposition
void parseMirrorDeposition()
Parse the mirror-deposition band radius and fit/guard tolerances.
Definition CD_AmrMesh.cpp:2937
AmrMesh::m_maxEbisBoxSize
int m_maxEbisBoxSize
Maximum box size for EBIS generation.
Definition CD_AmrMesh.H:2355
AmrMesh::getNumberOfEbGhostCells
int getNumberOfEbGhostCells() const
Get number of ghost cells used for EB grid generation.
Definition CD_AmrMesh.cpp:3237
AmrMesh::setBaseImplicitFunction
void setBaseImplicitFunction(const phase::which_phase a_phase, const RefCountedPtr< BaseIF > &a_baseIF)
Set implicit function for a specific phase. Need e.g. for level-sets.
Definition CD_AmrMesh.cpp:941
AmrMesh::getFinestLevel
int getFinestLevel() const
Get finest grid level.
Definition CD_AmrMesh.cpp:3171
AmrMesh::m_redistributionRadius
int m_redistributionRadius
Redistribution radius.
Definition CD_AmrMesh.H:2410
AmrMesh::getDomains
const Vector< ProblemDomain > & getDomains() const
Get domains.
Definition CD_AmrMesh.cpp:3378
AmrMesh::m_numLsfGhostCells
int m_numLsfGhostCells
Number of ghost cells to use when writing level-set to grid.
Definition CD_AmrMesh.H:2390
CellCentroidInterpolation::Type
Type
Supported interpolation types.
Definition CD_CellCentroidInterpolation.H:44
EBAMRData
Default class for holding LevelData<T> data across an EBAMR realm.
Definition CD_EBAMRData.H:41
EBAMRParticleMesh
AMR driver that deposits/interpolates ParticleContainer particles across the hierarchy.
Definition CD_EBAMRParticleMesh.H:95
EBAMRSurfaceDeposition
class for handling surface deposition of particles with EB and AMR.
Definition CD_EBAMRSurfaceDeposition.H:30
EBCentroidInterpolation::Type
Type
Supported interpolation types.
Definition CD_EBCentroidInterpolation.H:44
EBCoarseToFineInterp::Type
Type
Type of interpolation methods supported. PWC = Piecewise constant, ignoring the embedded boundary....
Definition CD_EBCoarseToFineInterp.H:43
ParticleContainer
AMR-hierarchy container of computational particles, stored per patch in Struct-of-Arrays form.
Definition CD_ParticleContainer.H:123
ParticleSoA
Arena-backed Struct-of-Arrays particle container for a single grid patch.
Definition CD_ParticleSoA.H:655
phase::which_phase
which_phase
Enumeration of supported phases.
Definition CD_MultiFluidIndexSpace.H:38
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