chombo-discharge
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CD_AmrMesh.H
Go to the documentation of this file.
1/*
2 * SPDX-FileCopyrightText: 2021-2026 SINTEF Energy Research
3 *
4 * SPDX-License-Identifier: GPL-3.0-or-later
5 */
6
15#ifndef CD_AMRMESH_H
16#define CD_AMRMESH_H
17
18// Chombo includes
19#include <DisjointBoxLayout.H>
20#include <ProblemDomain.H>
21
22// Our includes
23#include <CD_EBAMRData.H>
24#include <CD_EBCoarAve.H>
25#include <CD_ComputationalGeometry.H>
26#include <CD_MultiFluidIndexSpace.H>
27#include <CD_LoadBalancing.H>
28#include <CD_MFLevelGrid.H>
29#include <CD_EBReflux.H>
30#include <CD_DomainFluxIFFAB.H>
31#include <CD_DomainFluxIFFABFactory.H>
32#include <CD_ParticleContainer.H>
33#include <CD_Realm.H>
34#include <CD_ParticleGhostMask.H>
35#include <CD_CopyStrategy.H>
36#include <CD_LoadBalancing.H>
37#include <CD_NamespaceHeader.H>
38
44class AmrMesh
45{
46public:
50 AmrMesh();
51
56 AmrMesh(const AmrMesh& a_other) = delete;
57
62 AmrMesh(const AmrMesh&& a_other) = delete;
63
67 virtual ~AmrMesh();
68
73 AmrMesh&
74 operator=(const AmrMesh& a_other) = delete;
75
80 AmrMesh&
81 operator=(const AmrMesh&& a_other) = delete;
82
93 template <typename T>
94 void
95 copyData(EBAMRData<T>& a_dst,
96 const EBAMRData<T>& a_src,
97 const CopyStrategy& a_toRegion = CopyStrategy::Valid,
98 const CopyStrategy& a_fromRegion = CopyStrategy::Valid) const noexcept;
99
111 template <typename T>
112 void
113 copyData(EBAMRData<T>& a_dst,
114 const EBAMRData<T>& a_src,
115 const Interval& a_dstComps,
116 const Interval& a_srcComps,
117 const CopyStrategy& a_toRegion = CopyStrategy::Valid,
118 const CopyStrategy& a_fromRegion = CopyStrategy::Valid) const noexcept;
119
133 template <typename T>
134 void
135 copyData(LevelData<T>& a_dst,
136 const LevelData<T>& a_src,
137 const int a_level,
138 const std::string a_toRealm,
139 const std::string a_fromRealm,
140 const CopyStrategy& a_toRegion = CopyStrategy::Valid,
141 const CopyStrategy& a_fromRegion = CopyStrategy::Valid) const noexcept;
142
158 template <typename T>
159 void
160 copyData(LevelData<T>& a_dst,
161 const LevelData<T>& a_src,
162 const int a_level,
163 const std::string a_toRealm,
164 const std::string a_fromRealm,
165 const Interval& a_dstComps,
166 const Interval& a_srcComps,
167 const CopyStrategy& a_toRegion = CopyStrategy::Valid,
168 const CopyStrategy& a_fromRegion = CopyStrategy::Valid) const noexcept;
169
174 template <typename T>
175 void
176 deallocate(Vector<T*>& a_data) const;
177
182 template <typename T>
183 void
184 deallocate(Vector<RefCountedPtr<T>>& a_data) const;
185
190 template <typename T>
191 void
192 deallocate(EBAMRData<T>& a_data) const;
193
200 template <typename T>
201 void
202 alias(Vector<T*>& a_alias, const Vector<RefCountedPtr<T>>& a_data) const;
203
210 template <typename T, typename S>
211 void
212 alias(Vector<T*>& a_alias, const EBAMRData<S>& a_data) const;
213
221 template <typename P, typename Traits>
222 void
223 allocate(ParticleContainer<P, Traits>& a_container, const std::string& a_realm) const;
224
230 template <typename T>
231 void
232 allocatePointer(Vector<RefCountedPtr<T>>& a_data) const;
233
240 template <typename T>
241 void
242 allocatePointer(Vector<RefCountedPtr<T>>& a_data, const int a_finestLevel) const;
243
250 template <typename T>
251 void
252 allocatePointer(EBAMRData<T>& a_data, const std::string& a_realm) const;
253
261 template <typename T>
262 void
263 allocatePointer(EBAMRData<T>& a_data, const std::string& a_realm, const int a_finestLevel) const;
264
272 EBAMRCellData
273 slice(EBAMRCellData& a_original, const Interval a_variables) const noexcept;
274
282 EBAMRCellData
283 slice(const EBAMRCellData& a_original, const Interval a_variables) const noexcept;
284
288 void
289 parseOptions();
290
295 void
296 parseRuntimeOptions();
297
305 void
306 registerOperator(const std::string& a_operator, const std::string& a_realm, const phase::which_phase a_phase);
307
316 void
317 registerMask(const std::string& a_mask, const int a_buffer, const std::string& a_realm);
318
322 void
323 buildDomains();
324
331 void
332 setFinestLevel(const int a_finestLevel);
333
338 void
339 setCoarsestGrid(const IntVect& a_nCells);
340
346 bool
347 queryRealm(const std::string& a_realm) const;
348
354 bool
355 getEbCf() const;
356
362 void
363 registerRealm(const std::string& a_realm);
364
372 void
373 alias(EBAMRCellData& a_data,
374 const phase::which_phase a_phase,
375 const MFAMRCellData& a_mfdata,
376 const int a_finestLevel) const;
377
385 void
386 alias(EBAMRFluxData& a_data,
387 const phase::which_phase a_phase,
388 const MFAMRFluxData& a_mfdata,
389 const int a_finestLevel) const;
390
397 void
398 alias(EBAMRCellData& a_data, const phase::which_phase a_phase, const MFAMRCellData& a_mfdata) const;
399
406 void
407 alias(EBAMRFluxData& a_data, const phase::which_phase a_phase, const MFAMRFluxData& a_mfdata) const;
408
415 void
416 alias(EBAMRIVData& a_data, const phase::which_phase a_phase, const MFAMRIVData& a_mfdata) const;
417
424 EBAMRCellData
425 alias(const phase::which_phase a_phase, const MFAMRCellData& a_mfdata) const;
426
433 EBAMRFluxData
434 alias(const phase::which_phase a_phase, const MFAMRFluxData& a_mfdata) const;
435
442 EBAMRIVData
443 alias(const phase::which_phase a_phase, const MFAMRIVData& a_mfdata) const;
444
454 void
455 computeGradient(EBAMRCellData& a_gradient,
456 const EBAMRCellData& a_phi,
457 const std::string& a_realm,
458 const phase::which_phase a_phase) const;
459
469 void
470 computeGradient(EBAMRFluxData& a_gradient,
471 const EBAMRCellData& a_phi,
472 const std::string& a_realm,
473 const phase::which_phase a_phase) const;
474
483 void
484 computeGradient(MFAMRCellData& a_gradient, const MFAMRCellData& a_phi, const std::string& a_realm) const;
485
494 void
495 computeGradient(MFAMRFluxData& a_gradient, const MFAMRCellData& a_phi, const std::string& a_realm) const;
496
506 void
507 allocate(EBAMRCellData& a_data,
508 const std::string& a_realm,
509 const phase::which_phase a_phase,
510 const int a_nComp,
511 const int a_ghost = -1) const;
512
523 void
524 allocate(LevelData<EBCellFAB>& a_data,
525 const std::string& a_realm,
526 const phase::which_phase a_phase,
527 const int a_level,
528 const int a_nComp,
529 const int a_ghost = -1) const;
530
540 void
541 allocate(EBAMRFluxData& a_data,
542 const std::string& a_realm,
543 const phase::which_phase a_phase,
544 const int a_nComp,
545 const int a_ghost = -1) const;
546
556 void
557 allocate(EBAMRIVData& a_data,
558 const std::string& a_realm,
559 const phase::which_phase a_phase,
560 const int a_nComp,
561 const int a_ghost = -1) const;
562
572 void
573 allocate(EBAMRIFData& a_data,
574 const std::string& a_realm,
575 const phase::which_phase a_phase,
576 const int a_nComp,
577 const int a_ghost = -1) const;
578
587 void
588 allocate(EBAMRBool& a_data, const std::string& a_realm, const int a_nComp, const int a_ghost = -1) const;
589
600 void
601 allocate(EBAMRFAB& a_data, const std::string& a_realm, const int a_nComp, const int a_ghost = -1) const;
602
611 void
612 allocate(MFAMRCellData& a_data, const std::string& a_realm, const int a_nComp, const int a_ghost = -1) const;
613
622 void
623 allocate(MFAMRFluxData& a_data, const std::string& a_realm, const int a_nComp, const int a_ghost = -1) const;
624
633 void
634 allocate(MFAMRIVData& a_data, const std::string& a_realm, const int a_nComp, const int a_ghost = 0) const;
635
643 void
644 reallocate(EBAMRCellData& a_data, const phase::which_phase a_phase, const int a_lmin) const;
645
653 void
654 reallocate(EBAMRFluxData& a_data, const phase::which_phase a_phase, const int a_lmin) const;
655
663 void
664 reallocate(EBAMRIVData& a_data, const phase::which_phase a_phase, const int a_lmin) const;
665
673 void
674 reallocate(EBAMRIFData& a_data, const phase::which_phase a_phase, const int a_lmin) const;
675
682 void
683 reallocate(EBAMRBool& a_data, const int a_lmin) const;
684
691 void
692 reallocate(MFAMRCellData& a_data, const int a_lmin) const;
693
700 void
701 reallocate(MFAMRFluxData& a_data, const int a_lmin) const;
702
709 void
710 reallocate(MFAMRIVData& a_data, const int a_lmin) const;
711
718 void
719 average(MFAMRCellData& a_data, const std::string& a_realm, const Average& a_average) const;
720
726 void
727 arithmeticAverage(MFAMRCellData& a_data, const std::string& a_realm) const;
728
734 void
735 harmonicAverage(MFAMRCellData& a_data, const std::string& a_realm) const;
736
742 void
743 conservativeAverage(MFAMRCellData& a_data, const std::string& a_realm) const;
744
751 void
752 average(MFAMRFluxData& a_data, const std::string& a_realm, const Average& a_average) const;
753
761 void
762 arithmeticAverage(MFAMRFluxData& a_data, const std::string& a_realm) const;
763
771 void
772 harmonicAverage(MFAMRFluxData& a_data, const std::string& a_realm) const;
773
779 void
780 conservativeAverage(MFAMRFluxData& a_data, const std::string& a_realm) const;
781
789 void
790 average(EBAMRCellData& a_data,
791 const std::string& a_realm,
792 const phase::which_phase a_phase,
793 const Average& a_average) const;
794
803 void
804 average(EBAMRCellData& a_data,
805 const std::string& a_realm,
806 const phase::which_phase a_phase,
807 const Average& a_average,
808 const Interval& a_variables) const;
809
816 void
817 arithmeticAverage(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
818
826 void
827 arithmeticAverage(EBAMRCellData& a_data,
828 const std::string& a_realm,
829 const phase::which_phase a_phase,
830 const Interval& a_variables) const;
831
838 void
839 harmonicAverage(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
840
848 void
849 harmonicAverage(EBAMRCellData& a_data,
850 const std::string& a_realm,
851 const phase::which_phase a_phase,
852 const Interval& a_variables) const;
853
860 void
861 conservativeAverage(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
862
870 void
871 conservativeAverage(EBAMRCellData& a_data,
872 const std::string& a_realm,
873 const phase::which_phase a_phase,
874 const Interval& a_variables) const;
875
883 void
884 average(EBAMRFluxData& a_data,
885 const std::string& a_realm,
886 const phase::which_phase a_phase,
887 const Average& a_average) const;
888
897 void
898 arithmeticAverage(EBAMRFluxData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
899
908 void
909 harmonicAverage(EBAMRFluxData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
910
917 void
918 conservativeAverage(EBAMRFluxData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
919
927 void
928 average(EBAMRIVData& a_data,
929 const std::string& a_realm,
930 const phase::which_phase a_phase,
931 const Average& a_average) const;
932
939 void
940 arithmeticAverage(EBAMRIVData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
941
948 void
949 harmonicAverage(EBAMRIVData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
950
957 void
958 conservativeAverage(EBAMRIVData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
959
970 template <typename P, typename Traits>
971 void
972 depositParticles(EBAMRIVData& a_meshData,
973 const std::string& a_realm,
974 const phase::which_phase& a_phase,
975 const ParticleContainer<P, Traits>& a_particles) const noexcept;
976
989 template <typename P, typename Traits>
990 void
991 depositWeight(EBAMRCellData& a_meshData,
992 const std::string& a_realm,
993 const phase::which_phase& a_phase,
994 const ParticleContainer<P, Traits>& a_particles,
995 const DepositionType a_depositionType,
996 const CoarseFineDeposition a_coarseFineDeposition,
997 const bool a_forceIrregNGP);
998
1015 template <typename P, typename Traits, typename CellGather>
1016 void
1017 depositGathered(EBAMRCellData& a_meshData,
1018 const std::string& a_realm,
1019 const phase::which_phase& a_phase,
1020 const ParticleContainer<P, Traits>& a_particles,
1021 const DepositionType a_depositionType,
1022 const CoarseFineDeposition a_coarseFineDeposition,
1023 const bool a_forceIrregNGP,
1024 CellGather a_cellGather);
1025
1041 template <auto... Members, typename P, typename Traits>
1042 void
1043 depositParticles(EBAMRCellData& a_meshData,
1044 const std::string& a_realm,
1045 const phase::which_phase& a_phase,
1046 const ParticleContainer<P, Traits>& a_particles,
1047 const DepositionType a_depositionType,
1048 const CoarseFineDeposition a_coarseFineDeposition,
1049 const bool a_forceIrregNGP);
1050
1062 template <typename P, typename Traits>
1063 void
1064 interpolateWeight(ParticleContainer<P, Traits>& a_particles,
1065 const std::string& a_realm,
1066 const phase::which_phase& a_phase,
1067 const EBAMRCellData& a_meshScalarField,
1068 const DepositionType a_interpType,
1069 const bool a_forceIrregNGP) const;
1070
1085 template <auto... Members, typename P, typename Traits>
1086 void
1087 interpolateParticles(ParticleContainer<P, Traits>& a_particles,
1088 const std::string& a_realm,
1089 const phase::which_phase& a_phase,
1090 const EBAMRCellData& a_meshField,
1091 const DepositionType a_interpType,
1092 const bool a_forceIrregNGP) const;
1093
1102 template <typename P, typename Traits>
1103 void
1104 removeCoveredParticlesIF(ParticleContainer<P, Traits>& a_particles,
1105 const phase::which_phase& a_phase,
1106 const Real a_tolerance) const;
1107
1117 template <typename P, typename Traits>
1118 void
1119 removeCoveredParticlesDiscrete(ParticleContainer<P, Traits>& a_particles,
1120 const phase::which_phase& a_phase,
1121 const Real a_tolerance) const;
1122
1130 template <typename P, typename Traits>
1131 void
1132 removeCoveredParticlesVoxels(ParticleContainer<P, Traits>& a_particles, const phase::which_phase& a_phase) const;
1133
1146 template <typename P, typename Traits>
1147 void
1148 transferCoveredParticlesIF(ParticleContainer<P, Traits>& a_particlesFrom,
1149 ParticleContainer<P, Traits>& a_particlesTo,
1150 const phase::which_phase& a_phase,
1151 const Real a_tolerance) const;
1152
1164 template <typename P, typename Traits>
1165 void
1166 transferCoveredParticlesDiscrete(ParticleContainer<P, Traits>& a_particlesFrom,
1167 ParticleContainer<P, Traits>& a_particlesTo,
1168 const phase::which_phase& a_phase,
1169 const Real a_tolerance) const;
1170
1179 template <typename P, typename Traits>
1180 void
1181 transferCoveredParticlesVoxels(ParticleContainer<P, Traits>& a_particlesFrom,
1182 ParticleContainer<P, Traits>& a_particlesTo,
1183 const phase::which_phase& a_phase) const;
1184
1195 template <typename P, typename Traits>
1196 void
1197 transferIrregularParticles(ParticleContainer<P, Traits>& a_dstParticles,
1198 ParticleContainer<P, Traits>& a_srcParticles,
1199 const phase::which_phase a_phase) const noexcept;
1200
1220 template <auto... OldPosition, typename P, typename Traits>
1221 void
1222 intersectParticlesRaycastIF(
1223 ParticleContainer<P, Traits>& a_activeParticles,
1224 ParticleContainer<P, Traits>& a_ebParticles,
1225 ParticleContainer<P, Traits>& a_domainParticles,
1226 const phase::which_phase a_phase,
1227 const Real a_tolerance,
1228 const bool a_deleteParticles,
1229 const std::function<void(ParticleSoA<P, Traits>&, std::size_t)>& a_nonDeletionModifier) const noexcept;
1230
1248 template <auto... OldPosition, typename P, typename Traits>
1249 void
1250 intersectParticlesBisectIF(
1251 ParticleContainer<P, Traits>& a_activeParticles,
1252 ParticleContainer<P, Traits>& a_ebParticles,
1253 ParticleContainer<P, Traits>& a_domainParticles,
1254 const phase::which_phase a_phase,
1255 const Real a_bisectionStep,
1256 const bool a_deleteParticles,
1257 const std::function<void(ParticleSoA<P, Traits>&, std::size_t)>& a_nonDeletionModifier) const noexcept;
1258
1265 void
1266 interpGhost(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
1267
1276 void
1277 interpGhost(LevelData<EBCellFAB>& a_fineData,
1278 const LevelData<EBCellFAB>& a_coarData,
1279 const int a_fineLevel,
1280 const std::string& a_realm,
1281 const phase::which_phase a_phase) const;
1282
1288 void
1289 interpGhost(MFAMRCellData& a_data, const std::string& a_realm) const;
1290
1296 void
1297 interpGhostPwl(MFAMRCellData& a_data, const std::string& a_realm) const;
1298
1305 void
1306 interpGhostPwl(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
1307
1315 void
1316 interpGhostMG(MFAMRCellData& a_data, const std::string& a_realm) const;
1317
1326 void
1327 interpGhostMG(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const;
1328
1340 void
1341 interpToNewGrids(MFAMRCellData& a_newData,
1342 const MFAMRCellData& a_oldData,
1343 const int a_lmin,
1344 const int a_oldFinestLevel,
1345 const int a_newFinestLevel,
1346 const EBCoarseToFineInterp::Type a_type);
1347
1360 void
1361 interpToNewGrids(EBAMRCellData& a_newData,
1362 const EBAMRCellData& a_oldData,
1363 const phase::which_phase a_phase,
1364 const int a_lmin,
1365 const int a_oldFinestLevel,
1366 const int a_newFinestLevel,
1367 const EBCoarseToFineInterp::Type a_type);
1368
1381 void
1382 interpToNewGrids(EBAMRIVData& a_newData,
1383 const EBAMRIVData& a_oldData,
1384 const phase::which_phase a_phase,
1385 const int a_lmin,
1386 const int a_oldFinestLevel,
1387 const int a_newFinestLevel,
1388 const EBCoarseToFineInterp::Type a_type);
1389
1399 template <typename P, typename Traits>
1400 void
1401 remapToNewGrids(ParticleContainer<P, Traits>& a_particles,
1402 const int a_lmin,
1403 const int a_newFinestLevel) const noexcept;
1404
1413 void
1414 interpToCentroids(EBAMRCellData& a_data, const std::string& a_realm, const phase::which_phase a_phase) const noexcept;
1415
1423 void
1424 interpToCentroids(LevelData<EBCellFAB>& a_data,
1425 const std::string& a_realm,
1426 const phase::which_phase a_phase,
1427 const int a_level) const noexcept;
1428
1438 void
1439 interpToCentroids(EBCellFAB& a_centroidData,
1440 const EBCellFAB& a_cellData,
1441 const std::string& a_realm,
1442 const phase::which_phase a_phase,
1443 const int a_level,
1444 const DataIndex& a_din) const noexcept;
1445
1455 void
1456 interpToCentroids(EBAMRIVData& a_centroidData,
1457 const EBAMRCellData& a_cellData,
1458 const std::string& a_realm,
1459 const phase::which_phase a_phase) const noexcept;
1460
1469 void
1470 interpToCentroids(LevelData<BaseIVFAB<Real>>& a_centroidData,
1471 const LevelData<EBCellFAB>& a_cellData,
1472 const std::string& a_realm,
1473 const phase::which_phase a_phase,
1474 const int a_level) const noexcept;
1475
1483 void
1484 interpToEB(EBAMRIVData& a_centroidData,
1485 const EBAMRCellData& a_cellData,
1486 const std::string& a_realm,
1487 const phase::which_phase a_phase) const noexcept;
1488
1497 void
1498 interpToEB(LevelData<BaseIVFAB<Real>>& a_centroidData,
1499 const LevelData<EBCellFAB>& a_cellData,
1500 const std::string& a_realm,
1501 const phase::which_phase a_phase,
1502 const int a_level) const noexcept;
1503
1513 void
1514 interpToEB(BaseIVFAB<Real>& a_centroidData,
1515 const EBCellFAB& a_cellData,
1516 const std::string& a_realm,
1517 const phase::which_phase a_phase,
1518 const int a_level,
1519 const DataIndex& a_din) const noexcept;
1520
1530 void
1531 nonConservativeDivergence(EBAMRIVData& a_nonConsDivF,
1532 const EBAMRCellData& a_kappaDivF,
1533 const std::string& a_realm,
1534 const phase::which_phase& a_phase) const noexcept;
1535
1546 void
1547 nonConservativeDivergence(LevelData<BaseIVFAB<Real>>& a_nonConsDivF,
1548 const LevelData<EBCellFAB>& a_kappaDivF,
1549 const int& a_level,
1550 const std::string& a_realm,
1551 const phase::which_phase& a_phase) const noexcept;
1552
1557 void
1558 setMultifluidIndexSpace(const RefCountedPtr<MultiFluidIndexSpace>& a_multiFluidIndexSpace);
1559
1565 void
1566 setBaseImplicitFunction(const phase::which_phase a_phase, const RefCountedPtr<BaseIF>& a_baseIF);
1567
1571 void
1572 preRegrid();
1573
1580 void
1581 regridAmr(const Vector<IntVectSet>& a_tags, const int a_lmin, const int a_hardcap = -1);
1582
1590 void
1591 regridRealm(const std::string& a_realm,
1592 const Vector<Vector<int>>& a_procs,
1593 const Vector<Vector<Box>>& a_boxes,
1594 const int a_lmin);
1595
1599 void
1600 postRegrid();
1601
1608 void
1609 setGrids(const Vector<Vector<Box>>& a_boxes, const std::map<std::string, Vector<Vector<long int>>>& a_realmsAndLoads);
1610
1615 void
1616 regridOperators(const int a_lmin);
1617
1623 void
1624 regridOperators(const std::string& a_realm, const int a_lmin);
1625
1629 void
1630 sanityCheck() const;
1631
1636 int
1637 getFinestLevel() const;
1638
1643 int
1644 getMaxAmrDepth() const;
1645
1650 int
1651 getMaxSimulationDepth() const;
1652
1657 int
1658 getMinBlockSize() const;
1659
1665 int
1666 getBlockingFactor() const
1667 {
1668 return this->getMinBlockSize();
1669 }
1670
1675 int
1676 getMaxBlockSize() const;
1677
1683 int
1684 getMaxBoxSize() const
1685 {
1686 return this->getMaxBlockSize();
1687 }
1688
1693 int
1694 getBrBuffer() const;
1695
1700 int
1701 getMaxEbisBoxSize() const;
1702
1707 int
1708 getNumberOfGhostCells() const;
1709
1714 int
1715 getNumberOfEbGhostCells() const;
1716
1721 int
1722 getRedistributionRadius() const;
1723
1728 Real
1729 getFinestDx() const;
1730
1735 RealVect
1736 getProbLo() const;
1737
1742 RealVect
1743 getProbHi() const;
1744
1749 ProblemDomain
1750 getFinestDomain() const;
1751
1756 const Vector<Real>&
1757 getDx() const;
1758
1763 const Vector<int>&
1764 getRefinementRatios() const;
1765
1773 int
1774 getRefinementRatio(const int a_level1, const int a_level2) const;
1775
1781 const RefCountedPtr<BaseIF>&
1782 getBaseImplicitFunction(const phase::which_phase a_phase) const;
1783
1789 const Vector<DisjointBoxLayout>&
1790 getProxyGrids() const;
1791
1797 const Vector<DisjointBoxLayout>&
1798 getGrids(const std::string& a_realm) const;
1799
1804 const Vector<ProblemDomain>&
1805 getDomains() const;
1806
1814 const AMRMask&
1815 getMask(const std::string& a_mask, const int a_buffer, const std::string& a_realm) const;
1816
1822 const AMRMask&
1823 getValidCells(const std::string& a_realm) const;
1824
1830 const Vector<RefCountedPtr<LevelTiles>>&
1831 getLevelTiles(const std::string& a_realm) const;
1832
1838 void
1839 registerParticleGhostMask(const std::string& a_realm, const int a_width);
1840
1847 const AMRParticleGhostMask&
1848 getParticleGhostMask(const std::string& a_realm, const int a_width) const;
1849
1858 const AMRParticleGhostMask&
1859 getParticleGhostMaskFineToCoar(const std::string& a_realm, const int a_width) const;
1860
1869 const AMRParticleGhostMask&
1870 getParticleGhostMaskCoarToFine(const std::string& a_realm, const int a_width) const;
1871
1877 const AMRParticleGhostMask&
1878 getTrivialParticleGhostMask() const;
1879
1890 const AMRMask&
1891 getParticleGhostExposure(const std::string& a_realm, const int a_width) const;
1892
1899 const Vector<RefCountedPtr<EBLevelGrid>>&
1900 getEBLevelGrid(const std::string& a_realm, const phase::which_phase a_phase) const;
1901
1908 const Vector<RefCountedPtr<EBLevelGrid>>&
1909 getEBLevelGridCoFi(const std::string& a_realm, const phase::which_phase a_phase) const;
1910
1917 const Vector<EBISLayout>&
1918 getEBISLayout(const std::string& a_realm, const phase::which_phase a_phase) const;
1919
1925 const Vector<RefCountedPtr<MFLevelGrid>>&
1926 getMFLevelGrid(const std::string& a_realm) const;
1927
1936 Vector<RefCountedPtr<LayoutData<VoFIterator>>>&
1937 getVofIterator(const std::string& a_realm, const phase::which_phase a_phase) const;
1938
1948 Vector<RefCountedPtr<LayoutData<VoFIterator>>>&
1949 getMultiCutVofIterator(const std::string& a_realm, const phase::which_phase a_phase) const;
1950
1959 Vector<RefCountedPtr<LayoutData<std::array<FaceIterator, SpaceDim>>>>&
1960 getFaceIterator(const std::string& a_realm, const phase::which_phase a_phase) const;
1961
1970 Vector<RefCountedPtr<LayoutData<std::array<FaceIterator, SpaceDim>>>>&
1971 getFaceIteratorNoBoundary(const std::string& a_realm, const phase::which_phase a_phase) const;
1972
1984 Vector<RefCountedPtr<LayoutData<std::array<FaceIterator, SpaceDim>>>>&
1985 getFaceIteratorWithTangentialGhosts(const std::string& a_realm, const phase::which_phase a_phase) const;
1986
1997 Vector<RefCountedPtr<LayoutData<std::array<FaceIterator, SpaceDim>>>>&
1998 getMultiCutFaceIterator(const std::string& a_realm, const phase::which_phase a_phase) const;
1999
2006 const EBAMRFAB&
2007 getLevelset(const std::string& a_realm, const phase::which_phase a_phase) const;
2008
2015 const EBAMRCellData&
2016 getRegularCells(const std::string& a_realm, const phase::which_phase a_phase) const;
2017
2024 const EBAMRCellData&
2025 getCoveredCells(const std::string& a_realm, const phase::which_phase a_phase) const;
2026
2033 const EBAMRCellData&
2034 getNotCoveredCells(const std::string& a_realm, const phase::which_phase a_phase) const;
2035
2042 const EBAMRCellData&
2043 getIrregularCells(const std::string& a_realm, const phase::which_phase a_phase) const;
2044
2051 EBAMRParticleMesh&
2052 getParticleMesh(const std::string& a_realm, const phase::which_phase a_phase) const;
2053
2060 EBAMRSurfaceDeposition&
2061 getSurfaceDeposition(const std::string& a_realm, const phase::which_phase a_phase) const;
2062
2069 Vector<RefCountedPtr<EBCoarAve>>&
2070 getCoarseAverage(const std::string& a_realm, const phase::which_phase a_phase) const;
2071
2078 Vector<RefCountedPtr<EBMultigridInterpolator>>&
2079 getMultigridInterpolator(const std::string& a_realm, const phase::which_phase a_phase) const;
2080
2087 Vector<RefCountedPtr<EBCoarseToFineInterp>>&
2088 getFineInterp(const std::string& a_realm, const phase::which_phase a_phase) const;
2089
2096 Vector<RefCountedPtr<EBReflux>>&
2097 getFluxRegister(const std::string& a_realm, const phase::which_phase a_phase) const;
2098
2105 Vector<RefCountedPtr<EBFluxRedistribution>>&
2106 getRedistributionOp(const std::string& a_realm, const phase::which_phase a_phase) const;
2107
2108#ifdef CH_USE_PETSC
2113 const RefCountedPtr<PetscGrid>&
2114 getPetscGrid(const std::string& a_realm) const noexcept;
2115#endif
2116
2121 std::vector<std::string>
2122 getRealms() const;
2123
2128 BoxSorting
2129 getBoxSorting() const;
2130
2136 RefCountedPtr<EBIndexSpace>&
2137 getEBIndexSpace(const phase::which_phase a_phase)
2138 {
2139 return m_multifluidIndexSpace->getEBIndexSpace(a_phase);
2140 }
2141
2142protected:
2146 enum class GridGenerationMethod
2147 {
2148 BergerRigoutsous,
2149 Tiled,
2150 };
2151
2155 mutable std::map<std::string, RefCountedPtr<Realm>> m_realms;
2156
2160 std::map<phase::which_phase, RefCountedPtr<BaseIF>> m_baseif;
2161
2165 std::map<std::string, Vector<DisjointBoxLayout>> m_oldGrids;
2166
2171 std::map<std::string, Vector<Copier>> m_oldToNewCellCopiers;
2172
2177 std::map<std::string, Vector<Copier>> m_oldToNewEBCopiers;
2178
2183 std::map<std::pair<std::string, std::string>, Vector<Copier>> m_validToValidRealmCopiers;
2184
2189 std::map<std::pair<std::string, std::string>, Vector<Copier>> m_validToValidGhostRealmCopiers;
2190
2195 std::map<std::pair<std::string, std::string>, Vector<Copier>> m_validGhostToValidRealmCopiers;
2196
2201 std::map<std::pair<std::string, std::string>, Vector<Copier>> m_validGhostToValidGhostRealmCopiers;
2202
2206 GridGenerationMethod m_gridGenerationMethod;
2207
2211 BoxSorting m_boxSort;
2212
2216 RefCountedPtr<MultiFluidIndexSpace> m_multifluidIndexSpace;
2217
2221 CellCentroidInterpolation::Type m_cellCentroidInterpolationType;
2222
2226 EBCentroidInterpolation::Type m_ebCentroidInterpolationType;
2227
2231 IntVect m_numCells;
2232
2236 Real m_fillRatioBR;
2237
2241 RealVect m_probLo;
2242
2246 RealVect m_probHi;
2247
2251 int m_refRatio;
2252
2256 int m_verbosity;
2257
2261 int m_finestLevel;
2262
2266 int m_oldFinestLevel;
2267
2271 int m_maxAmrDepth;
2272
2276 int m_maxSimulationDepth;
2277
2281 int m_maxBlockSize;
2282
2286 int m_maxEbisBoxSize;
2287
2291 int m_bufferSizeBR;
2292
2296 int m_minBlockSize;
2297
2301 int m_numEbGhostsCells;
2302
2306 int m_numGhostCells;
2307
2311 int m_numLsfGhostCells;
2312
2316 int m_multigridInterpOrder;
2317
2321 int m_multigridInterpRadius;
2322
2326 int m_multigridInterpWeight;
2327
2331 int m_redistributionRadius;
2332
2336 bool m_hasGrids;
2337
2341 bool m_hasRegridCopiers;
2342
2346 Vector<DisjointBoxLayout> m_grids;
2347
2351 Vector<ProblemDomain> m_domains;
2352
2356 Vector<int> m_refinementRatios;
2357
2361 Vector<Real> m_dx;
2362
2366 void
2367 defineRealms();
2368
2377 void
2378 buildGrids(const Vector<IntVectSet>& a_tags, const int a_lmin, const int a_hardcap = -1);
2379
2383 void
2384 buildCopiers();
2385
2389 void
2390 parseProbLoHiCorners();
2391
2395 void
2396 parseGridGeneration();
2397
2401 void
2402 parseVerbosity();
2403
2407 void
2408 parseCoarsestLevelNumCells();
2409
2413 void
2414 parseMaxAmrDepth();
2415
2419 void
2420 parseMaxSimulationDepth();
2421
2425 void
2426 parseRefinementRatios();
2427
2431 void
2432 parseBrBufferSize();
2433
2437 void
2438 parseBrFillRatio();
2439
2443 void
2444 parseMaxBlockSize();
2445
2450 void
2451 parseMaxEbisBoxSize();
2452
2456 void
2457 parseMinBlockSize();
2458
2463 void
2464 parseEbGhostCells();
2465
2469 void
2470 parseNumGhostCells();
2471
2475 void
2476 parseMultigridInterpolator();
2477
2481 void
2482 parseRedistributionRadius();
2483
2487 void
2488 parseCellCentroidInterpolation();
2489
2493 void
2494 parseEBCentroidInterpolation();
2495
2506 void
2507 computeGradient(LevelData<EBCellFAB>& a_gradient,
2508 const LevelData<EBCellFAB>& a_phi,
2509 const std::string& a_realm,
2510 const phase::which_phase a_phase,
2511 const int a_lvl) const;
2512};
2513
2514#include <CD_NamespaceFooter.H>
2515
2516#include <CD_AmrMeshImplem.H>
2517
2518#endif
CD_AmrMeshImplem.H
Implementation of CD_AmrMesh.H.
Average
Average
Various averaging methods.
Definition CD_Average.H:25
BoxSorting
BoxSorting
Enum for sorting boxes.
Definition CD_BoxSorting.H:22
CoarseFineDeposition
CoarseFineDeposition
Coarse-fine deposition types (see CD_EBAMRParticleMesh for how these are handled).
Definition CD_CoarseFineDeposition.H:28
CD_ComputationalGeometry.H
Declaration of base class for defining geometries.
CD_CopyStrategy.H
Simple enum for distinguishing copying strategies.
CopyStrategy
CopyStrategy
Enum for distinguishing how we copy data Valid => valid region ValidGhost => valid+ghost region.
Definition CD_CopyStrategy.H:24
DepositionType
DepositionType
Deposition types.
Definition CD_DepositionType.H:24
CD_DomainFluxIFFABFactory.H
Declaration of factory class for DomainFluxIFFAB.
CD_DomainFluxIFFAB.H
Declaration of a BaseIFFAB wrapper that holds domain fluxes.
CD_EBAMRData.H
Class for holding data across EBAMR hierarchies.
CD_EBCoarAve.H
Declaration of conservative coarsening utility.
CD_EBReflux.H
Declaration of a class which can reflux over the coarse-fine interface.
CD_LoadBalancing.H
Declaration of a static class for various load balancing operations.
CD_MFLevelGrid.H
Declaration of a wrapper for wrapping multifluid EBLevelGrids.
CD_MultiFluidIndexSpace.H
Multi-fluid index space.
CD_ParticleContainer.H
Declaration of an AMR-hierarchy container that owns per-patch ParticleSoA leaves.
CD_ParticleGhostMask.H
Declaration of ParticleGhostMask, a per-box CSR lookup of particle ghost scatter targets.
AMRParticleGhostMask
Vector< RefCountedPtr< LayoutData< ParticleGhostMask > > > AMRParticleGhostMask
AMR-wide particle ghost-target lookup: one per-box CSR table per level, indexed by SOURCE level.
Definition CD_ParticleGhostMask.H:210
CD_Realm.H
Declaration of the Realm class.
AMRMask
Vector< RefCountedPtr< LevelData< BaseFab< bool > > > > AMRMask
Alias for cutting down on the typic of booleans defined over AMR grids.
Definition CD_Realm.H:33
AmrMesh
Class for handling spatial operations.
Definition CD_AmrMesh.H:45
AmrMesh::operator=
AmrMesh & operator=(const AmrMesh &a_other)=delete
Disallowed copy assignment.
AmrMesh::getTrivialParticleGhostMask
const AMRParticleGhostMask & getTrivialParticleGhostMask() const
Get a trivial (empty) particle ghost mask that scatters no particles.
Definition CD_AmrMesh.cpp:3521
AmrMesh::m_refRatio
int m_refRatio
Refinement ratio.
Definition CD_AmrMesh.H:2251
AmrMesh::getFaceIterator
Vector< RefCountedPtr< LayoutData< std::array< FaceIterator, SpaceDim > > > > & getFaceIterator(const std::string &a_realm, const phase::which_phase a_phase) const
Get face iterators over cut-cell faces in each valid grid box (FaceStop::SurroundingWithBoundary).
Definition CD_AmrMesh.cpp:3338
AmrMesh::parseRuntimeOptions
void parseRuntimeOptions()
Parse runtime options.
Definition CD_AmrMesh.cpp:986
AmrMesh::m_oldToNewCellCopiers
std::map< std::string, Vector< Copier > > m_oldToNewCellCopiers
Storage for copiers from the old grids to the new ones.
Definition CD_AmrMesh.H:2171
AmrMesh::registerOperator
void registerOperator(const std::string &a_operator, const std::string &a_realm, const phase::which_phase a_phase)
Register an operator over a realm and a phase.
Definition CD_AmrMesh.cpp:3902
AmrMesh::allocatePointer
void allocatePointer(Vector< RefCountedPtr< T > > &a_data) const
Allocate pointer but not any memory blocks.
Definition CD_AmrMeshImplem.H:265
AmrMesh::getSurfaceDeposition
EBAMRSurfaceDeposition & getSurfaceDeposition(const std::string &a_realm, const phase::which_phase a_phase) const
Get EBAMRSurfaceDeposition surface deposition operator.
Definition CD_AmrMesh.cpp:3702
AmrMesh::getMask
const AMRMask & getMask(const std::string &a_mask, const int a_buffer, const std::string &a_realm) const
Get a registered mask.
Definition CD_AmrMesh.cpp:3407
AmrMesh::getRealms
std::vector< std::string > getRealms() const
Get the name of all Realms.
Definition CD_AmrMesh.cpp:4022
AmrMesh::getProbHi
RealVect getProbHi() const
Get upper-right corner of computational domain.
Definition CD_AmrMesh.cpp:3053
AmrMesh::parseBrBufferSize
void parseBrBufferSize()
Parse buffer size for Berger-Rigoutsous grid algorithm.
Definition CD_AmrMesh.cpp:2695
AmrMesh::getFinestDx
Real getFinestDx() const
Get resolution on the finest grid level.
Definition CD_AmrMesh.cpp:3204
AmrMesh::getMaxBlockSize
int getMaxBlockSize() const
Get maximum permitted block size.
Definition CD_AmrMesh.cpp:3141
AmrMesh::registerRealm
void registerRealm(const std::string &a_realm)
Register a new realm.
Definition CD_AmrMesh.cpp:3889
AmrMesh::getBaseImplicitFunction
const RefCountedPtr< BaseIF > & getBaseImplicitFunction(const phase::which_phase a_phase) const
Get implicit function for a specific phase.
Definition CD_AmrMesh.cpp:3237
AmrMesh::AmrMesh
AmrMesh(const AmrMesh &&a_other)=delete
Disallowed move constructor.
AmrMesh::transferCoveredParticlesIF
void transferCoveredParticlesIF(ParticleContainer< P, Traits > &a_particlesFrom, ParticleContainer< P, Traits > &a_particlesTo, const phase::which_phase &a_phase, const Real a_tolerance) const
Transfer SoA particles inside the EB (implicit-function test) from one container to another: f(x) > a...
Definition CD_AmrMeshImplem.H:666
AmrMesh::m_fillRatioBR
Real m_fillRatioBR
Fill ratio.
Definition CD_AmrMesh.H:2236
AmrMesh::allocate
void allocate(ParticleContainer< P, Traits > &a_container, const std::string &a_realm) const
Allocate a struct-of-arrays particle container on the given realm.
Definition CD_AmrMeshImplem.H:238
AmrMesh::getFinestDomain
ProblemDomain getFinestDomain() const
Get finest domain.
Definition CD_AmrMesh.cpp:3193
AmrMesh::parseCellCentroidInterpolation
void parseCellCentroidInterpolation()
Parse centroid interpolation stencils.
Definition CD_AmrMesh.cpp:2860
AmrMesh::getCoarseAverage
Vector< RefCountedPtr< EBCoarAve > > & getCoarseAverage(const std::string &a_realm, const phase::which_phase a_phase) const
Get the coarsening utility.
Definition CD_AmrMesh.cpp:3719
AmrMesh::getLevelTiles
const Vector< RefCountedPtr< LevelTiles > > & getLevelTiles(const std::string &a_realm) const
Get the tiled space representation.
Definition CD_AmrMesh.cpp:3439
AmrMesh::m_oldFinestLevel
int m_oldFinestLevel
Finest level before a regrid.
Definition CD_AmrMesh.H:2266
AmrMesh::copyData
void copyData(EBAMRData< T > &a_dst, const EBAMRData< T > &a_src, const CopyStrategy &a_toRegion=CopyStrategy::Valid, const CopyStrategy &a_fromRegion=CopyStrategy::Valid) const noexcept
Method for copying from a source container to a destination container. User supplies information abou...
Definition CD_AmrMeshImplem.H:23
AmrMesh::getProxyGrids
const Vector< DisjointBoxLayout > & getProxyGrids() const
Get the "proxy" grids in AmrMesh.
Definition CD_AmrMesh.cpp:3260
AmrMesh::interpGhostMG
void interpGhostMG(MFAMRCellData &a_data, const std::string &a_realm) const
Interpolate ghost cells over a realm and phase.
Definition CD_AmrMesh.cpp:2065
AmrMesh::m_numCells
IntVect m_numCells
Coarsest box where we compute.
Definition CD_AmrMesh.H:2231
AmrMesh::postRegrid
void postRegrid()
Run post-regrid operations.
Definition CD_AmrMesh.cpp:1079
AmrMesh::parseMaxAmrDepth
void parseMaxAmrDepth()
Parse the maximum permitted AMR depth.
Definition CD_AmrMesh.cpp:2525
AmrMesh::m_probHi
RealVect m_probHi
Domain simulation corner.
Definition CD_AmrMesh.H:2246
AmrMesh::registerParticleGhostMask
void registerParticleGhostMask(const std::string &a_realm, const int a_width)
Register a particle ghost-mask width on a realm so it is (re)built at every regrid.
Definition CD_AmrMesh.cpp:3455
AmrMesh::getValidCells
const AMRMask & getValidCells(const std::string &a_realm) const
Get a map of all valid cells on a specified realm.
Definition CD_AmrMesh.cpp:3423
AmrMesh::m_grids
Vector< DisjointBoxLayout > m_grids
Grids.
Definition CD_AmrMesh.H:2346
AmrMesh::m_multifluidIndexSpace
RefCountedPtr< MultiFluidIndexSpace > m_multifluidIndexSpace
MultiFluidIndexSpace.
Definition CD_AmrMesh.H:2216
AmrMesh::interpolateWeight
void interpolateWeight(ParticleContainer< P, Traits > &a_particles, const std::string &a_realm, const phase::which_phase &a_phase, const EBAMRCellData &a_meshScalarField, const DepositionType a_interpType, const bool a_forceIrregNGP) const
Interpolate a mesh scalar field onto the SoA container's weight column.
Definition CD_AmrMeshImplem.H:434
AmrMesh::m_probLo
RealVect m_probLo
Domain simulation corner.
Definition CD_AmrMesh.H:2241
AmrMesh::nonConservativeDivergence
void nonConservativeDivergence(EBAMRIVData &a_nonConsDivF, const EBAMRCellData &a_kappaDivF, const std::string &a_realm, const phase::which_phase &a_phase) const noexcept
Compute a non-conservative divergence.
Definition CD_AmrMesh.cpp:3822
AmrMesh::m_bufferSizeBR
int m_bufferSizeBR
Set buffer size.
Definition CD_AmrMesh.H:2291
AmrMesh::intersectParticlesBisectIF
void intersectParticlesBisectIF(ParticleContainer< P, Traits > &a_activeParticles, ParticleContainer< P, Traits > &a_ebParticles, ParticleContainer< P, Traits > &a_domainParticles, const phase::which_phase a_phase, const Real a_bisectionStep, const bool a_deleteParticles, const std::function< void(ParticleSoA< P, Traits > &, std::size_t)> &a_nonDeletionModifier) const noexcept
SoA bisection-based particle intersection algorithm.
Definition CD_AmrMeshImplem.H:1041
AmrMesh::setCoarsestGrid
void setCoarsestGrid(const IntVect &a_nCells)
Set the coarsest grid cells.
Definition CD_AmrMesh.cpp:2484
AmrMesh::parseMaxSimulationDepth
void parseMaxSimulationDepth()
Set maximum simulation depth.
Definition CD_AmrMesh.cpp:2544
AmrMesh::getMaxSimulationDepth
int getMaxSimulationDepth() const
Get maximum permitted simulation depth.
Definition CD_AmrMesh.cpp:3086
AmrMesh::m_maxSimulationDepth
int m_maxSimulationDepth
Maximum allowed depth for simulation.
Definition CD_AmrMesh.H:2276
AmrMesh::setFinestLevel
void setFinestLevel(const int a_finestLevel)
Set the finest level.
Definition CD_AmrMesh.cpp:2601
AmrMesh::~AmrMesh
virtual ~AmrMesh()
Destructor.
AmrMesh::getGrids
const Vector< DisjointBoxLayout > & getGrids(const std::string &a_realm) const
Get the grids.
Definition CD_AmrMesh.cpp:3271
AmrMesh::m_multigridInterpRadius
int m_multigridInterpRadius
Multigrid interpolation radius.
Definition CD_AmrMesh.H:2321
AmrMesh::buildDomains
void buildDomains()
Build domains.
Definition CD_AmrMesh.cpp:1022
AmrMesh::getParticleGhostMask
const AMRParticleGhostMask & getParticleGhostMask(const std::string &a_realm, const int a_width) const
Get the same-level particle ghost mask on a realm for a registered width.
Definition CD_AmrMesh.cpp:3471
AmrMesh::m_gridGenerationMethod
GridGenerationMethod m_gridGenerationMethod
Grid generation method.
Definition CD_AmrMesh.H:2206
AmrMesh::getMinBlockSize
int getMinBlockSize() const
Get the minimum block size (i.e. the smallest possible box / tile size).
Definition CD_AmrMesh.cpp:3130
AmrMesh::parseRefinementRatios
void parseRefinementRatios()
Parse refinement ratios.
Definition CD_AmrMesh.cpp:2563
AmrMesh::m_refinementRatios
Vector< int > m_refinementRatios
AMR resolutions.
Definition CD_AmrMesh.H:2356
AmrMesh::getFaceIteratorNoBoundary
Vector< RefCountedPtr< LayoutData< std::array< FaceIterator, SpaceDim > > > > & getFaceIteratorNoBoundary(const std::string &a_realm, const phase::which_phase a_phase) const
Get face iterators over cut-cell faces in each valid grid box (FaceStop::SurroundingNoBoundary).
Definition CD_AmrMesh.cpp:3355
AmrMesh::getNotCoveredCells
const EBAMRCellData & getNotCoveredCells(const std::string &a_realm, const phase::which_phase a_phase) const
Get the non-covered-cell mask (1 in regular/irregular cells, 0 in covered cells) for a Realm and phas...
Definition CD_AmrMesh.cpp:3651
AmrMesh::m_verbosity
int m_verbosity
Verbosity.
Definition CD_AmrMesh.H:2256
AmrMesh::depositGathered
void depositGathered(EBAMRCellData &a_meshData, const std::string &a_realm, const phase::which_phase &a_phase, const ParticleContainer< P, Traits > &a_particles, const DepositionType a_depositionType, const CoarseFineDeposition a_coarseFineDeposition, const bool a_forceIrregNGP, CellGather a_cellGather)
Deposit a custom per-particle scalar (a_cellGather) of an SoA container on the mesh.
Definition CD_AmrMeshImplem.H:388
AmrMesh::getMultiCutVofIterator
Vector< RefCountedPtr< LayoutData< VoFIterator > > > & getMultiCutVofIterator(const std::string &a_realm, const phase::which_phase a_phase) const
Get vof iterators restricted to multiply-cut cells for a Realm and phase.
Definition CD_AmrMesh.cpp:3321
AmrMesh::interpToCentroids
void interpToCentroids(EBAMRCellData &a_data, const std::string &a_realm, const phase::which_phase a_phase) const noexcept
Interpolate data to centroids on realm and phase.
Definition CD_AmrMesh.cpp:2306
AmrMesh::getIrregularCells
const EBAMRCellData & getIrregularCells(const std::string &a_realm, const phase::which_phase a_phase) const
Get the irregular-cell mask (value 1 in irregular cells, 0 elsewhere) for a Realm and phase.
Definition CD_AmrMesh.cpp:3668
AmrMesh::m_hasRegridCopiers
bool m_hasRegridCopiers
Has regrid copiers or not.
Definition CD_AmrMesh.H:2341
AmrMesh::m_minBlockSize
int m_minBlockSize
Blocking factor.
Definition CD_AmrMesh.H:2296
AmrMesh::m_multigridInterpOrder
int m_multigridInterpOrder
Multigrid interpolation order.
Definition CD_AmrMesh.H:2316
AmrMesh::getParticleGhostMaskFineToCoar
const AMRParticleGhostMask & getParticleGhostMaskFineToCoar(const std::string &a_realm, const int a_width) const
Get the fine-to-coarse particle ghost mask on a realm for a registered width.
Definition CD_AmrMesh.cpp:3487
AmrMesh::m_validToValidRealmCopiers
std::map< std::pair< std::string, std::string >, Vector< Copier > > m_validToValidRealmCopiers
Map for copying between various Realms. First index is the "from" realm and second index is the "to" ...
Definition CD_AmrMesh.H:2183
AmrMesh::m_validGhostToValidRealmCopiers
std::map< std::pair< std::string, std::string >, Vector< Copier > > m_validGhostToValidRealmCopiers
Map for copying between various Realms. First index is the "from" realm and second index is the "to" ...
Definition CD_AmrMesh.H:2195
AmrMesh::parseNumGhostCells
void parseNumGhostCells()
Parse the number of ghost cells.
Definition CD_AmrMesh.cpp:2796
AmrMesh::depositWeight
void depositWeight(EBAMRCellData &a_meshData, const std::string &a_realm, const phase::which_phase &a_phase, const ParticleContainer< P, Traits > &a_particles, const DepositionType a_depositionType, const CoarseFineDeposition a_coarseFineDeposition, const bool a_forceIrregNGP)
Deposit the SoA container's weight column on the mesh (all coarse-fine strategies).
Definition CD_AmrMeshImplem.H:368
AmrMesh::getParticleGhostMaskCoarToFine
const AMRParticleGhostMask & getParticleGhostMaskCoarToFine(const std::string &a_realm, const int a_width) const
Get the coarse-to-fine particle ghost mask on a realm for a registered width.
Definition CD_AmrMesh.cpp:3504
AmrMesh::sanityCheck
void sanityCheck() const
Do a sanity check to make sure everything is set up correctly.
Definition CD_AmrMesh.cpp:2946
AmrMesh::m_numGhostCells
int m_numGhostCells
Number of ghost cells.
Definition CD_AmrMesh.H:2306
AmrMesh::getRedistributionOp
Vector< RefCountedPtr< EBFluxRedistribution > > & getRedistributionOp(const std::string &a_realm, const phase::which_phase a_phase) const
Get the redistribution operators.
Definition CD_AmrMesh.cpp:3787
AmrMesh::buildGrids
void buildGrids(const Vector< IntVectSet > &a_tags, const int a_lmin, const int a_hardcap=-1)
Build new internal AMR grids.
Definition CD_AmrMesh.cpp:1169
AmrMesh::parseVerbosity
void parseVerbosity()
Parse the verbosity for AmrMesh.
Definition CD_AmrMesh.cpp:2495
AmrMesh::m_maxBlockSize
int m_maxBlockSize
Max box size.
Definition CD_AmrMesh.H:2281
AmrMesh::GridGenerationMethod
GridGenerationMethod
Enum for having understandable notation for grid generation.
Definition CD_AmrMesh.H:2147
AmrMesh::m_validGhostToValidGhostRealmCopiers
std::map< std::pair< std::string, std::string >, Vector< Copier > > m_validGhostToValidGhostRealmCopiers
Map for copying between various Realms. First index is the "from" realm and second index is the "to" ...
Definition CD_AmrMesh.H:2201
AmrMesh::transferCoveredParticlesDiscrete
void transferCoveredParticlesDiscrete(ParticleContainer< P, Traits > &a_particlesFrom, ParticleContainer< P, Traits > &a_particlesTo, const phase::which_phase &a_phase, const Real a_tolerance) const
Transfer SoA particles inside the EB using discrete (EBISBox) information from one container to anoth...
Definition CD_AmrMeshImplem.H:731
AmrMesh::harmonicAverage
void harmonicAverage(MFAMRCellData &a_data, const std::string &a_realm) const
Harmonic coarsening of multifluid data.
Definition CD_AmrMesh.cpp:1570
AmrMesh::removeCoveredParticlesVoxels
void removeCoveredParticlesVoxels(ParticleContainer< P, Traits > &a_particles, const phase::which_phase &a_phase) const
Remove SoA particles that live in covered cells (voxel test).
Definition CD_AmrMeshImplem.H:611
AmrMesh::getEbCf
bool getEbCf() const
Check if mesh has an EBCF.
Definition CD_AmrMesh.cpp:3878
AmrMesh::getParticleGhostExposure
const AMRMask & getParticleGhostExposure(const std::string &a_realm, const int a_width) const
Get the particle boundary-exposure mask on a realm for a registered width.
Definition CD_AmrMesh.cpp:3534
AmrMesh::parseMinBlockSize
void parseMinBlockSize()
Parse the B-R blocking factor. For tiled mesh refinement this parses the tile size.
Definition CD_AmrMesh.cpp:2756
AmrMesh::m_dx
Vector< Real > m_dx
Level resolutions.
Definition CD_AmrMesh.H:2361
AmrMesh::m_numEbGhostsCells
int m_numEbGhostsCells
Number of ghost cells to use for eb stuff.
Definition CD_AmrMesh.H:2301
AmrMesh::transferIrregularParticles
void transferIrregularParticles(ParticleContainer< P, Traits > &a_dstParticles, ParticleContainer< P, Traits > &a_srcParticles, const phase::which_phase a_phase) const noexcept
Transfer SoA particles that are on the covered side of the EB to a different container.
Definition CD_AmrMeshImplem.H:1207
AmrMesh::parseOptions
void parseOptions()
Parse options. Called during the constructor.
Definition CD_AmrMesh.cpp:952
AmrMesh::buildCopiers
void buildCopiers()
Build copiers for copying between realms.
Definition CD_AmrMesh.cpp:1314
AmrMesh::getProbLo
RealVect getProbLo() const
Get lower-left corner of computational domain.
Definition CD_AmrMesh.cpp:3042
AmrMesh::m_boxSort
BoxSorting m_boxSort
Box sorting.
Definition CD_AmrMesh.H:2211
AmrMesh::setMultifluidIndexSpace
void setMultifluidIndexSpace(const RefCountedPtr< MultiFluidIndexSpace > &a_multiFluidIndexSpace)
Sets multifluid index space.
Definition CD_AmrMesh.cpp:928
AmrMesh::m_maxAmrDepth
int m_maxAmrDepth
Maximum amr depth.
Definition CD_AmrMesh.H:2271
AmrMesh::defineRealms
void defineRealms()
Define Realms.
Definition CD_AmrMesh.cpp:3935
AmrMesh::m_finestLevel
int m_finestLevel
Finest level.
Definition CD_AmrMesh.H:2261
AmrMesh::getEBLevelGridCoFi
const Vector< RefCountedPtr< EBLevelGrid > > & getEBLevelGridCoFi(const std::string &a_realm, const phase::which_phase a_phase) const
Get the coarsened fine EBLevelGrid for a Realm and phase.
Definition CD_AmrMesh.cpp:3567
AmrMesh::removeCoveredParticlesIF
void removeCoveredParticlesIF(ParticleContainer< P, Traits > &a_particles, const phase::which_phase &a_phase, const Real a_tolerance) const
Remove SoA particles that fall inside the EB (implicit-function test): f(x) > a_tolerance*dx.
Definition CD_AmrMeshImplem.H:472
AmrMesh::reallocate
void reallocate(EBAMRCellData &a_data, const phase::which_phase a_phase, const int a_lmin) const
Reallocate data.
Definition CD_AmrMesh.cpp:614
AmrMesh::m_oldToNewEBCopiers
std::map< std::string, Vector< Copier > > m_oldToNewEBCopiers
Storage for copiers from the old grids to the new ones.
Definition CD_AmrMesh.H:2177
AmrMesh::getEBLevelGrid
const Vector< RefCountedPtr< EBLevelGrid > > & getEBLevelGrid(const std::string &a_realm, const phase::which_phase a_phase) const
Get the EBLevelGrid for a Realm and phase.
Definition CD_AmrMesh.cpp:3550
AmrMesh::m_baseif
std::map< phase::which_phase, RefCountedPtr< BaseIF > > m_baseif
Implicit functions.
Definition CD_AmrMesh.H:2160
AmrMesh::regridRealm
void regridRealm(const std::string &a_realm, const Vector< Vector< int > > &a_procs, const Vector< Vector< Box > > &a_boxes, const int a_lmin)
Regrid a realm. This generates the grids for the realm, but does not do the operators on the realm.
Definition CD_AmrMesh.cpp:3965
AmrMesh::getNumberOfGhostCells
int getNumberOfGhostCells() const
Get the default number of ghost cells.
Definition CD_AmrMesh.cpp:3097
AmrMesh::queryRealm
bool queryRealm(const std::string &a_realm) const
Query if a realm exists.
Definition CD_AmrMesh.cpp:3861
AmrMesh::getLevelset
const EBAMRFAB & getLevelset(const std::string &a_realm, const phase::which_phase a_phase) const
Get levelset function, allocated over a grid for a Realm and phase.
Definition CD_AmrMesh.cpp:3601
AmrMesh::regridAmr
void regridAmr(const Vector< IntVectSet > &a_tags, const int a_lmin, const int a_hardcap=-1)
Regrid AMR. This versions generates the grids and Realms, but not the operator.
Definition CD_AmrMesh.cpp:1117
AmrMesh::operator=
AmrMesh & operator=(const AmrMesh &&a_other)=delete
Disallowed move assignment.
AmrMesh::parseCoarsestLevelNumCells
void parseCoarsestLevelNumCells()
Parse the coarsest domain grid.
Definition CD_AmrMesh.cpp:2508
AmrMesh::getEBIndexSpace
RefCountedPtr< EBIndexSpace > & getEBIndexSpace(const phase::which_phase a_phase)
Get EBIndexSpace corresponding to a particular phase.
Definition CD_AmrMesh.H:2137
AmrMesh::arithmeticAverage
void arithmeticAverage(MFAMRCellData &a_data, const std::string &a_realm) const
Arithmetic coarsening of multifluid data.
Definition CD_AmrMesh.cpp:1559
AmrMesh::parseRedistributionRadius
void parseRedistributionRadius()
Parse the default redistribution radius.
Definition CD_AmrMesh.cpp:2843
AmrMesh::intersectParticlesRaycastIF
void intersectParticlesRaycastIF(ParticleContainer< P, Traits > &a_activeParticles, ParticleContainer< P, Traits > &a_ebParticles, ParticleContainer< P, Traits > &a_domainParticles, const phase::which_phase a_phase, const Real a_tolerance, const bool a_deleteParticles, const std::function< void(ParticleSoA< P, Traits > &, std::size_t)> &a_nonDeletionModifier) const noexcept
SoA ray-casting particle intersection algorithm.
Definition CD_AmrMeshImplem.H:878
AmrMesh::setGrids
void setGrids(const Vector< Vector< Box > > &a_boxes, const std::map< std::string, Vector< Vector< long int > > > &a_realmsAndLoads)
Set grids from boxes and computational loads.
Definition CD_AmrMesh.cpp:2614
AmrMesh::getFaceIteratorWithTangentialGhosts
Vector< RefCountedPtr< LayoutData< std::array< FaceIterator, SpaceDim > > > > & getFaceIteratorWithTangentialGhosts(const std::string &a_realm, const phase::which_phase a_phase) const
Get per-direction face iterators covering cut-cell faces that reach into the tangential ghost layer.
Definition CD_AmrMesh.cpp:3372
AmrMesh::m_validToValidGhostRealmCopiers
std::map< std::pair< std::string, std::string >, Vector< Copier > > m_validToValidGhostRealmCopiers
Map for copying between various Realms. First index is the "from" realm and second index is the "to" ...
Definition CD_AmrMesh.H:2189
AmrMesh::computeGradient
void computeGradient(EBAMRCellData &a_gradient, const EBAMRCellData &a_phi, const std::string &a_realm, const phase::which_phase a_phase) const
Compute cell-centered gradient over an AMR hierarchy.
Definition CD_AmrMesh.cpp:1379
AmrMesh::getDx
const Vector< Real > & getDx() const
Get spatial resolutions.
Definition CD_AmrMesh.cpp:3215
AmrMesh::getBrBuffer
int getBrBuffer() const
Return buffer for B-R mesh refinement algorithm.
Definition CD_AmrMesh.cpp:3152
AmrMesh::getMultiCutFaceIterator
Vector< RefCountedPtr< LayoutData< std::array< FaceIterator, SpaceDim > > > > & getMultiCutFaceIterator(const std::string &a_realm, const phase::which_phase a_phase) const
Get face iterators restricted to multiply-cut faces in each valid grid box.
Definition CD_AmrMesh.cpp:3390
AmrMesh::getParticleMesh
EBAMRParticleMesh & getParticleMesh(const std::string &a_realm, const phase::which_phase a_phase) const
Get EBAMRParticleMesh operator.
Definition CD_AmrMesh.cpp:3685
AmrMesh::getEBISLayout
const Vector< EBISLayout > & getEBISLayout(const std::string &a_realm, const phase::which_phase a_phase) const
Get EBISLayouts for a Realm and phase.
Definition CD_AmrMesh.cpp:3287
AmrMesh::getMaxBoxSize
int getMaxBoxSize() const
Deprecated alias for getMaxBlockSize().
Definition CD_AmrMesh.H:1684
AmrMesh::m_realms
std::map< std::string, RefCountedPtr< Realm > > m_realms
These are all the Realms.
Definition CD_AmrMesh.H:2155
AmrMesh::getMaxEbisBoxSize
int getMaxEbisBoxSize() const
Get maximum box size for EBIS generation.
Definition CD_AmrMesh.cpp:3163
AmrMesh::AmrMesh
AmrMesh()
Default constructor.
Definition CD_AmrMesh.cpp:32
AmrMesh::parseEbGhostCells
void parseEbGhostCells()
Parse number of ghost cells for eb stuff.
Definition CD_AmrMesh.cpp:2779
AmrMesh::parseMultigridInterpolator
void parseMultigridInterpolator()
Parse settings for the multigrid interpolator.
Definition CD_AmrMesh.cpp:2818
AmrMesh::interpolateParticles
void interpolateParticles(ParticleContainer< P, Traits > &a_particles, const std::string &a_realm, const phase::which_phase &a_phase, const EBAMRCellData &a_meshField, const DepositionType a_interpType, const bool a_forceIrregNGP) const
Interpolate a mesh field onto one or more SoA payload columns.
Definition CD_AmrMeshImplem.H:453
AmrMesh::slice
EBAMRCellData slice(EBAMRCellData &a_original, const Interval a_variables) const noexcept
Slice cell-centered data in order to fetch a subset of components.
Definition CD_AmrMesh.cpp:46
AmrMesh::getRefinementRatio
int getRefinementRatio(const int a_level1, const int a_level2) const
Get refinement factor between two levels.
Definition CD_AmrMesh.cpp:3174
AmrMesh::registerMask
void registerMask(const std::string &a_mask, const int a_buffer, const std::string &a_realm)
Register a boolean mask over a realm.
Definition CD_AmrMesh.cpp:3919
AmrMesh::getRegularCells
const EBAMRCellData & getRegularCells(const std::string &a_realm, const phase::which_phase a_phase) const
Get the regular-cell mask (value 1 in regular cells, 0 elsewhere) for a Realm and phase.
Definition CD_AmrMesh.cpp:3617
AmrMesh::depositParticles
void depositParticles(EBAMRIVData &a_meshData, const std::string &a_realm, const phase::which_phase &a_phase, const ParticleContainer< P, Traits > &a_particles) const noexcept
Deposit the weight column of an SoA particle container onto the surface (EB).
Definition CD_AmrMeshImplem.H:348
AmrMesh::getMultigridInterpolator
Vector< RefCountedPtr< EBMultigridInterpolator > > & getMultigridInterpolator(const std::string &a_realm, const phase::which_phase a_phase) const
Get multigrid interpolation utility.
Definition CD_AmrMesh.cpp:3736
AmrMesh::interpToEB
void interpToEB(EBAMRIVData &a_centroidData, const EBAMRCellData &a_cellData, const std::string &a_realm, const phase::which_phase a_phase) const noexcept
Interpolate data to EB centroids on realm and phase.
Definition CD_AmrMesh.cpp:2415
AmrMesh::remapToNewGrids
void remapToNewGrids(ParticleContainer< P, Traits > &a_particles, const int a_lmin, const int a_newFinestLevel) const noexcept
Regrid a struct-of-arrays particle container to new grids.
Definition CD_AmrMeshImplem.H:324
AmrMesh::interpGhostPwl
void interpGhostPwl(MFAMRCellData &a_data, const std::string &a_realm) const
Interpolate ghost cells over a realm and phase. This uses piecewise linear interpolation (with limite...
Definition CD_AmrMesh.cpp:2000
AmrMesh::getBlockingFactor
int getBlockingFactor() const
Deprecated alias for getMinBlockSize().
Definition CD_AmrMesh.H:1666
AmrMesh::parseMaxBlockSize
void parseMaxBlockSize()
Parse the maximum permitted box size.
Definition CD_AmrMesh.cpp:2653
AmrMesh::m_cellCentroidInterpolationType
CellCentroidInterpolation::Type m_cellCentroidInterpolationType
Interpolation type for cell to cell centroid interpolation.
Definition CD_AmrMesh.H:2221
AmrMesh::parseEBCentroidInterpolation
void parseEBCentroidInterpolation()
Parse EB interpolation (or extrapolation) stencils.
Definition CD_AmrMesh.cpp:2903
AmrMesh::getMFLevelGrid
const Vector< RefCountedPtr< MFLevelGrid > > & getMFLevelGrid(const std::string &a_realm) const
Get EBISLayouts for a Realm.
Definition CD_AmrMesh.cpp:3584
AmrMesh::m_multigridInterpWeight
int m_multigridInterpWeight
Multigrid interpolation weights.
Definition CD_AmrMesh.H:2326
AmrMesh::m_oldGrids
std::map< std::string, Vector< DisjointBoxLayout > > m_oldGrids
Old grids.
Definition CD_AmrMesh.H:2165
AmrMesh::m_ebCentroidInterpolationType
EBCentroidInterpolation::Type m_ebCentroidInterpolationType
Interpolation type for cell to EB centroid interpolation.
Definition CD_AmrMesh.H:2226
AmrMesh::getVofIterator
Vector< RefCountedPtr< LayoutData< VoFIterator > > > & getVofIterator(const std::string &a_realm, const phase::which_phase a_phase) const
Get VoF iterators covering all cut-cells (singly- and multiply-cut) for a Realm and phase.
Definition CD_AmrMesh.cpp:3304
AmrMesh::getCoveredCells
const EBAMRCellData & getCoveredCells(const std::string &a_realm, const phase::which_phase a_phase) const
Get the covered-cell mask (value 1 in covered cells, 0 elsewhere) for a Realm and phase.
Definition CD_AmrMesh.cpp:3634
AmrMesh::preRegrid
void preRegrid()
Run pre-regrid operations.
Definition CD_AmrMesh.cpp:1047
AmrMesh::average
void average(MFAMRCellData &a_data, const std::string &a_realm, const Average &a_average) const
Average multifluid data over a specified realm.
Definition CD_AmrMesh.cpp:1519
AmrMesh::getFluxRegister
Vector< RefCountedPtr< EBReflux > > & getFluxRegister(const std::string &a_realm, const phase::which_phase a_phase) const
Get flux register.
Definition CD_AmrMesh.cpp:3770
AmrMesh::AmrMesh
AmrMesh(const AmrMesh &a_other)=delete
Disallowed copy constructor.
AmrMesh::parseBrFillRatio
void parseBrFillRatio()
Parse the Berger-Rigoutsos fill ratio.
Definition CD_AmrMesh.cpp:2585
AmrMesh::m_domains
Vector< ProblemDomain > m_domains
Problem domains.
Definition CD_AmrMesh.H:2351
AmrMesh::parseProbLoHiCorners
void parseProbLoHiCorners()
Parse the low/high corners of the computational domain.
Definition CD_AmrMesh.cpp:1004
AmrMesh::parseGridGeneration
void parseGridGeneration()
Parse the grid generation algorithm.
Definition CD_AmrMesh.cpp:2714
AmrMesh::getFineInterp
Vector< RefCountedPtr< EBCoarseToFineInterp > > & getFineInterp(const std::string &a_realm, const phase::which_phase a_phase) const
Get interpolator.
Definition CD_AmrMesh.cpp:3753
AmrMesh::interpToNewGrids
void interpToNewGrids(MFAMRCellData &a_newData, const MFAMRCellData &a_oldData, const int a_lmin, const int a_oldFinestLevel, const int a_newFinestLevel, const EBCoarseToFineInterp::Type a_type)
Interpolate data to new grids.
Definition CD_AmrMesh.cpp:2129
AmrMesh::parseMaxEbisBoxSize
void parseMaxEbisBoxSize()
Parse the maximum permitted box size.
Definition CD_AmrMesh.cpp:2676
AmrMesh::alias
void alias(Vector< T * > &a_alias, const Vector< RefCountedPtr< T > > &a_data) const
Turn smart-pointer data structure into regular-pointer data structure.
Definition CD_AmrMeshImplem.H:210
AmrMesh::m_hasGrids
bool m_hasGrids
Has grids or not.
Definition CD_AmrMesh.H:2336
AmrMesh::deallocate
void deallocate(Vector< T * > &a_data) const
Deallocate data.
Definition CD_AmrMeshImplem.H:162
AmrMesh::getMaxAmrDepth
int getMaxAmrDepth() const
Get maximum permitted amr depth.
Definition CD_AmrMesh.cpp:3075
AmrMesh::transferCoveredParticlesVoxels
void transferCoveredParticlesVoxels(ParticleContainer< P, Traits > &a_particlesFrom, ParticleContainer< P, Traits > &a_particlesTo, const phase::which_phase &a_phase) const
Transfer SoA particles that live in covered cells (voxel test) from one container to another.
Definition CD_AmrMeshImplem.H:818
AmrMesh::conservativeAverage
void conservativeAverage(MFAMRCellData &a_data, const std::string &a_realm) const
Conservative coarsening of multifluid data.
Definition CD_AmrMesh.cpp:1581
AmrMesh::getRefinementRatios
const Vector< int > & getRefinementRatios() const
Get refinement ratios.
Definition CD_AmrMesh.cpp:3226
AmrMesh::regridOperators
void regridOperators(const int a_lmin)
Regrid AMR operators. This is done for all realms.
Definition CD_AmrMesh.cpp:1138
AmrMesh::interpGhost
void interpGhost(EBAMRCellData &a_data, const std::string &a_realm, const phase::which_phase a_phase) const
Interpolate ghost vectors over a realm, using the default ghost cell interpolation method.
Definition CD_AmrMesh.cpp:1910
AmrMesh::getRedistributionRadius
int getRedistributionRadius() const
Get default redistribution radius.
Definition CD_AmrMesh.cpp:3119
AmrMesh::getBoxSorting
BoxSorting getBoxSorting() const
Get box sorting method.
Definition CD_AmrMesh.cpp:4040
AmrMesh::removeCoveredParticlesDiscrete
void removeCoveredParticlesDiscrete(ParticleContainer< P, Traits > &a_particles, const phase::which_phase &a_phase, const Real a_tolerance) const
Remove SoA particles inside the EB using discrete (EBISBox) information: covered cells,...
Definition CD_AmrMeshImplem.H:531
AmrMesh::m_maxEbisBoxSize
int m_maxEbisBoxSize
Maximum box size for EBIS generation.
Definition CD_AmrMesh.H:2286
AmrMesh::getNumberOfEbGhostCells
int getNumberOfEbGhostCells() const
Get number of ghost cells used for EB grid generation.
Definition CD_AmrMesh.cpp:3108
AmrMesh::setBaseImplicitFunction
void setBaseImplicitFunction(const phase::which_phase a_phase, const RefCountedPtr< BaseIF > &a_baseIF)
Set implicit function for a specific phase. Need e.g. for level-sets.
Definition CD_AmrMesh.cpp:941
AmrMesh::getFinestLevel
int getFinestLevel() const
Get finest grid level.
Definition CD_AmrMesh.cpp:3064
AmrMesh::m_redistributionRadius
int m_redistributionRadius
Redistribution radius.
Definition CD_AmrMesh.H:2331
AmrMesh::getDomains
const Vector< ProblemDomain > & getDomains() const
Get domains.
Definition CD_AmrMesh.cpp:3249
AmrMesh::m_numLsfGhostCells
int m_numLsfGhostCells
Number of ghost cells to use when writing level-set to grid.
Definition CD_AmrMesh.H:2311
CellCentroidInterpolation::Type
Type
Supported interpolation types.
Definition CD_CellCentroidInterpolation.H:44
EBAMRData
Default class for holding LevelData<T> data across an EBAMR realm.
Definition CD_EBAMRData.H:41
EBAMRParticleMesh
AMR driver that deposits/interpolates ParticleContainer particles across the hierarchy.
Definition CD_EBAMRParticleMesh.H:74
EBAMRSurfaceDeposition
class for handling surface deposition of particles with EB and AMR.
Definition CD_EBAMRSurfaceDeposition.H:30
EBCentroidInterpolation::Type
Type
Supported interpolation types.
Definition CD_EBCentroidInterpolation.H:44
EBCoarseToFineInterp::Type
Type
Type of interpolation methods supported. PWC = Piecewise constant, ignoring the embedded boundary....
Definition CD_EBCoarseToFineInterp.H:43
ParticleContainer
AMR-hierarchy container of computational particles, stored per patch in Struct-of-Arrays form.
Definition CD_ParticleContainer.H:123
ParticleSoA
Arena-backed Struct-of-Arrays particle container for a single grid patch.
Definition CD_ParticleSoA.H:655
phase::which_phase
which_phase
Enumeration of supported phases.
Definition CD_MultiFluidIndexSpace.H:38
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