12#ifndef CD_ItoKMCStepper_H
13#define CD_ItoKMCStepper_H
31#include <CD_NamespaceHeader.H>
45 AllMobileAndDiffusive,
49 ChargedMobileOrDiffusive,
50 ChargedMobileAndDiffusive,
58 template <
typename I = ItoSolver,
typename C = CdrCTU,
typename R = McPhoto,
typename F = FieldSolverGMG>
62 static_assert(std::is_base_of<ItoSolver, I>::value,
"I must derive from ItoSolver");
63 static_assert(std::is_base_of<CdrSolver, C>::value,
"C must derive from CdrSolver");
64 static_assert(std::is_base_of<McPhoto, R>::value,
"R must derive from McPhoto");
65 static_assert(std::is_base_of<FieldSolver, FieldSolverGMG>::value,
"F must derive from FieldSolver");
187 const int a_level)
const noexcept override;
336 AdvectionDiffusionIto,
337 AdvectionDiffusionCDR,
954 const int a_level)
const noexcept;
1781#include <CD_NamespaceFooter.H>
BoxSorting
Enum for sorting boxes.
Definition CD_BoxSorting.H:21
Declaration of a class which implements CdrMultigrid using MUSCL for advection.
Declaration of a class that holds a set of CdrSolvers (to cut down on typing).
EBRepresentation
Enum for putting some logic into how we think about EBs. This is just a simply supporting class for v...
Definition CD_EBRepresentation.H:22
Declaration of FieldSolverGMG.
Contains declaration of a base electrostatics solver class.
Main file for describing Ito-based plasma physics.
Implementation of CD_ItoKMCStepper.H.
SpeciesSubset
Enum for differentiating between types of particles.
Definition CD_ItoKMCStepper.H:40
Declaration of a class that holds a set of ItoSolvers.
Declaration of solver class for Ito diffusion.
Declaration of a radiative transfer solver which uses Monte Carlo sampling of computational or real p...
Declaration of a computational point particle.
Declaration of a class that holds a set of RtSolvers.
Declaration of a cut-cell ODE solver.
Declaration of main (abstract) time stepper class.
A particle class for use with ItoSolvers, i.e. drifting Brownian walkers.
Definition CD_ItoParticle.H:40
Base class for Ito diffusion particle models.
Definition CD_ItoSolver.H:35
WhichContainer
Enum class for distinguishing various types of particle containers.
Definition CD_ItoSolver.H:49
Radiative tranfer equation solver using Monte-Carlo simulation.
Definition CD_McPhoto.H:39
Templated class for holding particles on an AMR hierarchy with particle remapping.
Definition CD_ParticleContainer.H:51
Particle class for usage with Monte Carlo radiative transfer.
Definition CD_Photon.H:29
Base time stepper class that advances the Ito-KMC-Poisson system of equations. If you want a differen...
Definition CD_ItoKMCStepper.H:60
virtual void transferCoveredParticles(const SpeciesSubset a_speciesSubset, const EBRepresentation a_representation, const Real a_tolerance) noexcept
Transfer covered particles (i.e., particles inside the EB) from the ItoSolver bulk container to EB co...
Definition CD_ItoKMCStepperImplem.H:2444
Real m_relaxationTime
The relaxation time eps0/sigma.
Definition CD_ItoKMCStepper.H:604
virtual void setupCdr() noexcept
Set up the CDR solvers.
Definition CD_ItoKMCStepperImplem.H:444
Real m_maxReducedField
Storage for the maximum field strength that was computed.
Definition CD_ItoKMCStepper.H:501
bool m_abortOnFailure
Flag for abandoning simulation of Poisson solver fails.
Definition CD_ItoKMCStepper.H:440
virtual void getParticleStatistics(Real &a_avgParticles, Real &a_sigma, Real &a_minParticles, Real &a_maxParticles, int &a_minRank, int &a_maxRank)
Compute some particle statistics.
Definition CD_ItoKMCStepperImplem.H:1389
RefCountedPtr< SurfaceODESolver< 1 > > m_sigmaSolver
Surface charge solver.
Definition CD_ItoKMCStepper.H:404
virtual void computePhysicsPlotVariables(EBAMRCellData &a_physicsPlotVars) noexcept
Compute physics plot variables.
Definition CD_ItoKMCStepperImplem.H:5993
Vector< EBAMRCellData > m_fluidPhiIto
For holding the Ito species densities on the fluid realm.
Definition CD_ItoKMCStepper.H:642
virtual void computePhysicsDt() noexcept
Compute a physics-based maximum time step.
Definition CD_ItoKMCStepperImplem.H:5218
virtual void computeReactiveMeanEnergiesPerCell(EBAMRCellData &a_meanEnergies) noexcept
Compute the mean particle energy in all grid cells.
Definition CD_ItoKMCStepperImplem.H:3712
EBAMRCellData m_conductivityCell
Cell-centered conductivity.
Definition CD_ItoKMCStepper.H:676
EBAMRCellData m_particleOldItoPPC
For holding the previous number of particles per cell for all species.
Definition CD_ItoKMCStepper.H:712
Real m_particleAdvectionDt
The particle advective time step.
Definition CD_ItoKMCStepper.H:584
Real m_minParticleAdvectionCFL
Minimum CFL-like time step for particle advection.
Definition CD_ItoKMCStepper.H:533
Vector< EBAMRIVData > m_cdrFluxes
CDR fluxes for CDR BCs.
Definition CD_ItoKMCStepper.H:425
virtual void parseRuntimeOptions() noexcept override
Parse runtime configurable options.
Definition CD_ItoKMCStepperImplem.H:109
std::string m_name
Time stepper name.
Definition CD_ItoKMCStepper.H:367
phase::which_phase m_plasmaPhase
Phase where we solve for the plasma.
Definition CD_ItoKMCStepper.H:373
bool m_profile
Profile kernels or not.
Definition CD_ItoKMCStepper.H:455
EBAMRCellData m_neutralDensity
Storage for the neutral density.
Definition CD_ItoKMCStepper.H:670
virtual void computeElectricField(EBAMRCellData &a_electricField, const phase::which_phase a_phase) const noexcept
Recompute the electric field onto the specified data holder.
Definition CD_ItoKMCStepperImplem.H:1849
virtual void removeCoveredParticles(const SpeciesSubset a_which, const EBRepresentation a_representation, const Real a_tolerance) noexcept
Remove covered particles (i.e., particles inside the EB)
Definition CD_ItoKMCStepperImplem.H:2325
Vector< ParticleContainer< PointParticle > > m_cdrPhotoiProducts
Photoionization products to be put in the CDR equations.
Definition CD_ItoKMCStepper.H:649
BoxSorting m_boxSort
Box sorting method when using dual-grid with particle load balancing.
Definition CD_ItoKMCStepper.H:346
Real m_fluidAdvectionDiffusionCFL
CFL-like time step for fluid advection-diffusion.
Definition CD_ItoKMCStepper.H:563
virtual void setupRadiativeTransfer() noexcept
Set up the radiative transfer solver.
Definition CD_ItoKMCStepperImplem.H:463
Real m_physicsDt
The physics-based time step.
Definition CD_ItoKMCStepper.H:609
EBAMRCellData m_electricFieldParticle
Storage for holding the plasma phase electric field on the particle realm.
Definition CD_ItoKMCStepper.H:746
virtual void registerRealms() noexcept override
Register realms used for the simulation.
Definition CD_ItoKMCStepperImplem.H:1536
Real m_particleAdvectionDiffusionDt
The advection-diffusion time step.
Definition CD_ItoKMCStepper.H:594
virtual Vector< RefCountedPtr< ItoSolver > > getLoadBalanceSolvers() const noexcept
Get the solvers used for load balancing.
Definition CD_ItoKMCStepperImplem.H:5491
virtual void computeSpaceChargeDensity() noexcept
Compute the space charge. Calls the other version.
Definition CD_ItoKMCStepperImplem.H:1876
bool m_plotCurrentDensity
Plot conductivity or not.
Definition CD_ItoKMCStepper.H:480
Real m_maxShrinkDt
Maximum permissible time step shrinkage.
Definition CD_ItoKMCStepper.H:516
virtual void fillNeutralDensity() noexcept
Compute the neutral density on the mesh.
Definition CD_ItoKMCStepperImplem.H:1765
virtual void setVoltage(const std::function< Real(const Real a_time)> &a_voltage) noexcept
Set voltage used for the simulation.
Definition CD_ItoKMCStepperImplem.H:1753
virtual void advanceReactionNetwork(const Real a_dt) noexcept
Chemistry advance over time a_dt.
Definition CD_ItoKMCStepperImplem.H:3847
virtual Real getTime() const noexcept
Get current simulation time.
Definition CD_ItoKMCStepperImplem.H:1864
virtual void computeDummyPhysicsDt() noexcept
Special routine which performs a dummy KMC advance over a zero time step.
Definition CD_ItoKMCStepperImplem.H:5235
virtual int getNumberOfPlotVariables() const noexcept override
Get number of plot variables for the output file.
Definition CD_ItoKMCStepperImplem.H:886
Vector< ParticleContainer< Photon > > m_secondaryPhotons
List of secondary photons injected through the EB.
Definition CD_ItoKMCStepper.H:418
Real m_loadPerCell
The "background" load per cell when using particle load balancing.
Definition CD_ItoKMCStepper.H:523
EBAMRCellData m_physicsPlotVariables
Storage for physics plot variables.
Definition CD_ItoKMCStepper.H:665
virtual void remapParticles(const SpeciesSubset a_speciesSubset) noexcept
Remap a subset of ItoSolver particles.
Definition CD_ItoKMCStepperImplem.H:2568
Real m_physicsDtFactor
Relative factor for controlling.
Definition CD_ItoKMCStepper.H:614
bool m_redistributeCDR
Flag for abandoning simulation of Poisson solver fails.
Definition CD_ItoKMCStepper.H:445
virtual void parseVerbosity() noexcept
Parse chattiness.
Definition CD_ItoKMCStepperImplem.H:136
virtual void computeReactiveCdrParticlesPerCell(EBAMRCellData &a_ppc) noexcept
Compute the number of reactive particles per cell for the CDR solvers.
Definition CD_ItoKMCStepperImplem.H:3607
RefCountedPtr< FieldSolver > m_fieldSolver
Field solver.
Definition CD_ItoKMCStepper.H:399
virtual void registerOperators() noexcept override
Register operators used for the simulation.
Definition CD_ItoKMCStepperImplem.H:1550
EBAMRCellData m_particleScratch1
Scratch storage on the particle realm with 1 component.
Definition CD_ItoKMCStepper.H:779
EBAMRCellData m_EdotJ
Storage for holdnig E*J on the fluid realm. 1 component.
Definition CD_ItoKMCStepper.H:764
virtual void loadBalanceParticleRealm(Vector< Vector< int > > &a_procs, Vector< Vector< Box > > &a_boxes, const std::string a_realm, const Vector< DisjointBoxLayout > &a_grids, const int a_lmin, const int a_finestLevel) noexcept
Routine called by loadBalanceBoxes and used for particle-based load balancing.
Definition CD_ItoKMCStepperImplem.H:5569
virtual void averageDiffusionCoefficientsCellToFace() noexcept
Average cell-centered diffusion coefficient to faces.
Definition CD_ItoKMCStepperImplem.H:3423
virtual void parsePlotVariables() noexcept
Parse plot variables.
Definition CD_ItoKMCStepperImplem.H:179
virtual void parseSuperParticles() noexcept
Parse the desired number of particles per cell.
Definition CD_ItoKMCStepperImplem.H:215
virtual void writeData(LevelData< EBCellFAB > &a_output, int &a_comp, const EBAMRCellData &a_data, const std::string a_outputRealm, const int a_level, const bool a_interpToCentroids, const bool a_interpGhost) const noexcept
Write data to output. Convenience function.
Definition CD_ItoKMCStepperImplem.H:1044
Vector< ParticleContainer< ItoParticle > > m_secondaryParticles
List of secondary particles injected through the EB.
Definition CD_ItoKMCStepper.H:411
virtual void computeDensityGradients() noexcept
Compute grad(phi) and phi for both CDR and Ito species and put the result on the fluid realm.
Definition CD_ItoKMCStepperImplem.H:2011
virtual void computeEdotJSource(const Real a_dt) noexcept
Compute the energy source term for the various plasma species.
Definition CD_ItoKMCStepperImplem.H:5819
EBAMRCellData m_particleItoPPC
For holding the number of physical particles per cell for all Ito species.
Definition CD_ItoKMCStepper.H:694
virtual bool solvePoisson() noexcept
Solve the electrostatic problem.
Definition CD_ItoKMCStepperImplem.H:2103
virtual Real computeQminu() const noexcept
Compute negative charge.
Definition CD_ItoKMCStepperImplem.H:5356
virtual void multiplyCdrVelocitiesByMobilities() noexcept
Multiply CDR solver velocities by mobilities.
Definition CD_ItoKMCStepperImplem.H:2863
virtual void parseRedistributeCDR() noexcept
Parse CDR mass redistribution when assigning reactive products.
Definition CD_ItoKMCStepperImplem.H:165
virtual void computeCurrentDensity(EBAMRCellData &a_J) noexcept
Compute the current density.
Definition CD_ItoKMCStepperImplem.H:2051
TimeCode
An enum for encapsulating how time steps were restricted.
Definition CD_ItoKMCStepper.H:333
Vector< int > m_particlesPerCell
Target number of particles per cell when squishing ItoParticle's into superparticles.
Definition CD_ItoKMCStepper.H:490
Real m_toleranceEB
Accepted tolerance (relative to dx) for EB intersection.
Definition CD_ItoKMCStepper.H:528
virtual void writeNumberOfParticlesPerPatch(LevelData< EBCellFAB > &a_output, int &a_icomp, const std::string a_outputRealm, const int a_level) const noexcept
Write number of particles per patch to output holder.
Definition CD_ItoKMCStepperImplem.H:1111
EBAMRCellData m_fluidScratchD
Scratch storage on the fluid realm with SpaceDim components.
Definition CD_ItoKMCStepper.H:774
bool m_loadBalanceFluid
Load balance fluid realm or not.
Definition CD_ItoKMCStepper.H:470
virtual void parseTimeStepRestrictions() noexcept
Parse time step restrictions.
Definition CD_ItoKMCStepperImplem.H:315
EBAMRIVData m_particleScratchEB
Scratch storage for EB-only data on the particle realm. One component.
Definition CD_ItoKMCStepper.H:794
virtual void fillSecondaryEmissionEB(const Real a_dt) noexcept
Resolve particle injection at EBs.
Definition CD_ItoKMCStepperImplem.H:4794
EBAMRCellData m_particleYPC
For holding the number of generated photons per cell.
Definition CD_ItoKMCStepper.H:700
virtual void initialSigma() noexcept
Fill surface charge solver with initial data taken from the physics interface.
Definition CD_ItoKMCStepperImplem.H:701
ItoKMCStepper() noexcept
Default constructor. Sets default options.
Definition CD_ItoKMCStepperImplem.H:35
EBAMRCellData m_currentDensity
Storage for current density.
Definition CD_ItoKMCStepper.H:660
virtual void printStepReport() noexcept override
Print a step report. Used by Driver for user monitoring of simulation.
Definition CD_ItoKMCStepperImplem.H:1176
virtual void depositParticles(const SpeciesSubset a_speciesSubset) noexcept
Deposit a subset of the ItoSolver particles on the mesh.
Definition CD_ItoKMCStepperImplem.H:2683
Vector< EBAMRCellData > m_cdrMobilities
For holding the mobilities for the CDR species.
Definition CD_ItoKMCStepper.H:625
bool m_regridSuperparticles
Do or do not superparticle merging/splitting on regrids.
Definition CD_ItoKMCStepper.H:460
virtual void setupSigma() noexcept
Set up the surface charge solver.
Definition CD_ItoKMCStepperImplem.H:500
Vector< EBAMRCellData > m_loadBalancePPC
For holding the number of computational particles per cell when load balancing.
Definition CD_ItoKMCStepper.H:619
virtual void setupSolvers() noexcept override
Set up solvers.
Definition CD_ItoKMCStepperImplem.H:409
EBAMRCellData m_fluidPPC
For holding the number of particles per cell for all species.
Definition CD_ItoKMCStepper.H:730
virtual void parseOptions() noexcept
Parse options.
Definition CD_ItoKMCStepperImplem.H:89
virtual void advancePhotons(const Real a_dt) noexcept
Photon advancement routine.
Definition CD_ItoKMCStepperImplem.H:5412
Real m_minDt
Minimum permitted time step.
Definition CD_ItoKMCStepper.H:574
int m_mergeInterval
How often to merge superparticles.
Definition CD_ItoKMCStepper.H:496
virtual void preRegrid(const int a_lmin, const int a_oldFinestLevel) noexcept override
Perform pre-regrid operations - storing relevant data from the old grids.
Definition CD_ItoKMCStepperImplem.H:1598
EBAMRIVData m_fluidScratchEB
Scratch storage for EB-only data on the fluid realm. One component.
Definition CD_ItoKMCStepper.H:789
virtual void parseDualGrid() noexcept
Parse dual or single realm calculations.
Definition CD_ItoKMCStepperImplem.H:239
virtual void loadBalanceBoxes(Vector< Vector< int > > &a_procs, Vector< Vector< Box > > &a_boxes, const std::string a_realm, const Vector< DisjointBoxLayout > &a_grids, const int a_lmin, const int a_finestLevel) override
Load balance grid boxes for a specified realm.
Definition CD_ItoKMCStepperImplem.H:5547
virtual void reconcilePhotoionization() noexcept
Reconcile the results from photoionization reactions.
Definition CD_ItoKMCStepperImplem.H:4569
EBAMRCellData m_fluidScratch1
Scratch storage on the fluid realm having 1 component.
Definition CD_ItoKMCStepper.H:769
virtual void loadBalanceFluidRealm(Vector< Vector< int > > &a_procs, Vector< Vector< Box > > &a_boxes, const std::string a_realm, const Vector< DisjointBoxLayout > &a_grids, const int a_lmin, const int a_finestLevel) noexcept
Routine called by loadBalanceBoxes and used for particle-based load balancing.
Definition CD_ItoKMCStepperImplem.H:5722
EBAMRCellData m_fluidOldCdrPPC
For holding the previous number of physical particles per cell for all CDR species.
Definition CD_ItoKMCStepper.H:724
EBAMRCellData m_kmcDt
Storage for the non-critical time step computed by ItoKMCPhysics.
Definition CD_ItoKMCStepper.H:753
virtual Vector< std::string > getPlotVariableNames() const noexcept override
Get plot variable names.
Definition CD_ItoKMCStepperImplem.H:939
std::string m_fluidRealm
Realm used for the fluid part (i.e., electrostatic) part of the simulation.
Definition CD_ItoKMCStepper.H:357
virtual void sortPhotonsByCell(const McPhoto::WhichContainer a_which) noexcept
Sort photons by cells.
Definition CD_ItoKMCStepperImplem.H:5463
virtual Real computeQplus() const noexcept
Compute positive charge.
Definition CD_ItoKMCStepperImplem.H:5312
virtual void parseLoadBalance() noexcept
Parse load balancing.
Definition CD_ItoKMCStepperImplem.H:262
virtual void computeDriftVelocities() noexcept
Compute ItoSolver velocities.
Definition CD_ItoKMCStepperImplem.H:2889
EBAMRCellData m_electricFieldFluid
Storage for holding the plasma phase electric field on the fluid realm.
Definition CD_ItoKMCStepper.H:741
Real m_prevDt
Previous time step.
Definition CD_ItoKMCStepper.H:506
std::string m_particleRealm
Realm used for the particle part of the simulation.
Definition CD_ItoKMCStepper.H:362
EBAMRCellData m_particleScratchD
Scratch storage on the particle realm with SpaceDim components.
Definition CD_ItoKMCStepper.H:784
Real m_fluidAdvectionDiffusionDt
The advection-diffusion time step for the CDR equations.
Definition CD_ItoKMCStepper.H:599
Vector< EBAMRCellData > m_fluidGradPhiCDR
For holding the gradient of all CDR species densities.
Definition CD_ItoKMCStepper.H:631
virtual void setupPoisson() noexcept
Set up the electrostatic field solver.
Definition CD_ItoKMCStepperImplem.H:483
Real m_relaxTimeFactor
Factor proportional to the dielectric relaxation time dtRelax = eps0/sigma.
Definition CD_ItoKMCStepper.H:569
RefCountedPtr< CdrLayout< CdrSolver > > m_cdr
CDR solvers.
Definition CD_ItoKMCStepper.H:389
virtual void setupIto() noexcept
Set up the Ito particle solvers.
Definition CD_ItoKMCStepperImplem.H:425
virtual Real computeQsurf() const noexcept
Compute surface charge.
Definition CD_ItoKMCStepperImplem.H:5400
virtual Real computeDt() override
Compute a time step used for the advance method.
Definition CD_ItoKMCStepperImplem.H:1421
virtual void synchronizeSolverTimes(const int a_step, const Real a_time, const Real a_dt) noexcept override
Synchronize solver times for all the solvers.
Definition CD_ItoKMCStepperImplem.H:1157
virtual Real computeTotalCharge() const noexcept
Compute total charge.
Definition CD_ItoKMCStepperImplem.H:5292
virtual void resolveSecondaryEmissionEB(const Real a_dt) noexcept
Resolve secondary emission at the EB.
Definition CD_ItoKMCStepperImplem.H:5067
Real m_maxDt
Maximum permitted time step.
Definition CD_ItoKMCStepper.H:579
TimeCode m_timeCode
Time code for understanding how the time step was restricted.
Definition CD_ItoKMCStepper.H:351
virtual void regrid(const int a_lmin, const int a_oldFinestLevel, const int a_newFinestLevel) noexcept override
Regrid methods – puts all data on the new mesh.
Definition CD_ItoKMCStepperImplem.H:1696
Real m_minParticleAdvectionDiffusionCFL
Maximum CFL-like time step for particle advection-diffusion.
Definition CD_ItoKMCStepper.H:553
virtual Vector< long int > getCheckpointLoads(const std::string a_realm, const int a_level) const override
Get computational loads to be checkpointed.
Definition CD_ItoKMCStepperImplem.H:5770
EBAMRCellData m_fluidCdrPPC
For holding the number of physical particles per cell for all CDR species.
Definition CD_ItoKMCStepper.H:718
EBAMRFluxData m_conductivityFace
Face-centered conductivity.
Definition CD_ItoKMCStepper.H:682
virtual void computeDiffusionCoefficients() noexcept
Compute mesh-based diffusion coefficients for LFA coupling.
Definition CD_ItoKMCStepperImplem.H:3139
virtual void allocateInternals() noexcept
Allocate "internal" storage.
Definition CD_ItoKMCStepperImplem.H:535
bool m_plotParticlesPerPatch
Plot number of particles per patch or not.
Definition CD_ItoKMCStepper.H:485
virtual Real computeMaxReducedElectricField(const phase::which_phase a_phase) const noexcept
Compute the maximum electric field (norm)
Definition CD_ItoKMCStepperImplem.H:1820
EBAMRIVData m_conductivityEB
EB-centered conductivity.
Definition CD_ItoKMCStepper.H:688
Vector< EBAMRIVData > m_cdrFluxesExtrap
Extrapolated CDR fluxes.
Definition CD_ItoKMCStepper.H:430
Real m_maxParticleAdvectionCFL
Maximum CFL-like time step for particle advection.
Definition CD_ItoKMCStepper.H:538
virtual void setCdrVelocityFunctions() noexcept
Set the Cdr velocities to be sgn(charge) * E.
Definition CD_ItoKMCStepperImplem.H:2829
virtual void postRegrid() noexcept override
Perform post-regrid operations.
Definition CD_ItoKMCStepperImplem.H:1740
virtual Real computeRelaxationTime() noexcept
Compute the dielectric relaxation time.
Definition CD_ItoKMCStepperImplem.H:2071
virtual void parseParametersEB() noexcept
Parse parameters related to how we treat particle-EB interaction.
Definition CD_ItoKMCStepperImplem.H:393
virtual Real advance(const Real a_dt) override=0
Advancement method. Needs to be implemented by subclasses.
virtual void initialData() noexcept override
Fill solvers with initial data.
Definition CD_ItoKMCStepperImplem.H:663
Real m_maxParticleDiffusionCFL
Maximum CFL-like time step for particle diffusion.
Definition CD_ItoKMCStepper.H:548
virtual void postPlot() noexcept override
Perform post-plot operations.
Definition CD_ItoKMCStepperImplem.H:1586
virtual ~ItoKMCStepper() noexcept
Destructor.
Definition CD_ItoKMCStepperImplem.H:82
RefCountedPtr< ItoKMCPhysics > m_physics
Implementation of ItoKMCPhysics.
Definition CD_ItoKMCStepper.H:379
virtual void getMaxMinRelativeItoDensity(Real &a_maxDensity, Real &a_minDensity, std::string &a_maxSolver, std::string &a_minSolver) const noexcept
Get maximum density of the Ito species (only for charged species)
Definition CD_ItoKMCStepperImplem.H:1293
virtual void computeReactiveItoParticlesPerCell(EBAMRCellData &a_ppc) noexcept
Compute the number of reactive particles per cell.
Definition CD_ItoKMCStepperImplem.H:3487
virtual void writePlotData(LevelData< EBCellFAB > &a_output, int &a_icomp, const std::string a_outputRealm, const int a_level) const noexcept override
Write plot data to output holder.
Definition CD_ItoKMCStepperImplem.H:990
bool m_dualGrid
Using dual grid or not.
Definition CD_ItoKMCStepper.H:450
EBAMRCellData m_fluidYPC
For holding the number of generated photons per cell.
Definition CD_ItoKMCStepper.H:736
virtual void allocate() noexcept override
Allocate storage for solvers.
Definition CD_ItoKMCStepperImplem.H:517
RefCountedPtr< RtLayout< McPhoto > > m_rte
Radiative transfer solvers.
Definition CD_ItoKMCStepper.H:394
bool m_plotConductivity
Plot conductivity or not.
Definition CD_ItoKMCStepper.H:475
virtual void parseExitOnFailure() noexcept
Parse exit on failure.
Definition CD_ItoKMCStepperImplem.H:151
RefCountedPtr< ItoLayout< ItoSolver > > m_ito
Ito solvers.
Definition CD_ItoKMCStepper.H:384
Vector< int > m_loadBalanceIndices
Solver indices used when load-balancing the particle solvers.
Definition CD_ItoKMCStepper.H:654
EBAMRCellData m_particleEPS
For holding the mean particle energy.
Definition CD_ItoKMCStepper.H:706
std::function< Real(const Real a_time)> m_voltage
Voltage curve on the electrodes used in the simulation.
Definition CD_ItoKMCStepper.H:435
virtual void reconcileCdrDensities(const EBAMRCellData &a_newParticlesPerCell, const EBAMRCellData &a_oldParticlesPerCell, const Real a_dt) noexcept
Reconcile the CDR densities after the reaction network.
Definition CD_ItoKMCStepperImplem.H:4619
virtual void computeConductivityCell(EBAMRCellData &a_conductivity) noexcept
Compute the cell-centered conductiivty.
Definition CD_ItoKMCStepperImplem.H:1943
void reconcileParticles(const EBAMRCellData &a_newParticlesPerCell, const EBAMRCellData &a_oldParticlesPerCell, const EBAMRCellData &a_newPhotonsPerCell, const EBAMRCellData &a_electricField) const noexcept
Reconcile particles. At the bottom, this will call the physics interface for particle reconciliation.
Definition CD_ItoKMCStepperImplem.H:4218
Real m_minParticleDiffusionCFL
Minium CFL-like time step for particle diffusion.
Definition CD_ItoKMCStepper.H:543
virtual void postCheckpointPoisson() noexcept
Do some post-checkpoint operations for the electrostatic part.
Definition CD_ItoKMCStepperImplem.H:769
virtual bool loadBalanceThisRealm(const std::string a_realm) const override
Load balancing query for a specified realm. If this returns true for a_realm, load balancing routines...
Definition CD_ItoKMCStepperImplem.H:5526
virtual void prePlot() noexcept override
Perform pre-plot operations.
Definition CD_ItoKMCStepperImplem.H:1566
virtual void postInitialize() noexcept override
Post-initialization operations. Default does nothing.
Definition CD_ItoKMCStepperImplem.H:653
Real m_maxParticleAdvectionDiffusionCFL
Maximum CFL-like time step for particle advection-diffusion.
Definition CD_ItoKMCStepper.H:558
virtual void coarsenCDRSolvers() noexcept
Coarsen data for CDR solvers.
Definition CD_ItoKMCStepperImplem.H:4768
virtual void postCheckpointSetup() noexcept override
Perform post-checkpoint operations.
Definition CD_ItoKMCStepperImplem.H:750
Real m_particleDiffusionDt
The particle diffusive time step.
Definition CD_ItoKMCStepper.H:589
virtual void getMaxMinRelativeCDRDensity(Real &a_maxDensity, Real &a_minDensity, std::string &a_maxSolver, std::string &a_minSolver) const noexcept
Get maximum density of the CDR species (only for charged species)
Definition CD_ItoKMCStepperImplem.H:1342
Vector< EBAMRCellData > m_energySources
Storage for holding the energy sources for each species.
Definition CD_ItoKMCStepper.H:759
virtual void intersectParticles(const SpeciesSubset a_speciesSubset, const bool a_delete, const std::function< void(ItoParticle &)> a_nonDeletionModifier=[](ItoParticle &) -> void { return;}) noexcept
Intersect a subset of the particles with the domain and embedded boundary.
Definition CD_ItoKMCStepperImplem.H:2142
Real m_maxGrowthDt
Maximum permissible time step growth.
Definition CD_ItoKMCStepper.H:511
virtual void computeMobilities() noexcept
Compute mesh-based mobilities for LFA coupling.
Definition CD_ItoKMCStepperImplem.H:2914
virtual void setItoVelocityFunctions() noexcept
Set the Ito velocity functions. This is sgn(charge) * E.
Definition CD_ItoKMCStepperImplem.H:2798
Vector< EBAMRCellData > m_fluidGradPhiIto
For holding the gradient of all Ito species densities.
Definition CD_ItoKMCStepper.H:637
bool m_loadBalanceParticles
Load balance particle realm or not.
Definition CD_ItoKMCStepper.H:465
virtual void sortPhotonsByPatch(const McPhoto::WhichContainer a_which) noexcept
Sort photons by patch.
Definition CD_ItoKMCStepperImplem.H:5477
virtual void getPhysicalParticlesPerCell(EBAMRCellData &a_ppc) const noexcept
Get the physical number of particles per cell.
Definition CD_ItoKMCStepperImplem.H:3465
Base class for advancing equations.
Definition CD_TimeStepper.H:30
Base class for a tracer particle solver. This solver can advance particles in a pre-defined velocity ...
Definition CD_TracerParticleSolver.H:37
TracerParticleSolver()
Default constructor.
Definition CD_TracerParticleSolverImplem.H:25
Name containing various physics models for running chombo-discharge code.
Definition CD_AdvectionDiffusion.H:15
phase names
Definition CD_MultiFluidIndexSpace.H:27