Physics::CdrPlasma::CdrPlasmaImExSdcStepper Class Reference

Class for evolving plasma equations using implicit-explicit spectral deferred corrections. More...

#include <CD_CdrPlasmaImExSdcStepper.H>

Inheritance diagram for Physics::CdrPlasma::CdrPlasmaImExSdcStepper:

Collaboration diagram for Physics::CdrPlasma::CdrPlasmaImExSdcStepper:

Classes
class	CdrStorage
class	FieldStorage
class	RtStorage
class	SigmaStorage

Public Member Functions
	CdrPlasmaImExSdcStepper ()=delete
	Disallowed constructor – use the full constructor.
	CdrPlasmaImExSdcStepper (RefCountedPtr< CdrPlasmaPhysics > &a_physics)
	Full constructor. More...
virtual	~CdrPlasmaImExSdcStepper ()
	Destructor.
Real	advance (const Real a_dt) override
	Advance method. Implements the ImEx SDC algorithm. More...
void	allocateInternals () override
	Allocation method for setting up internal storage. More...
void	deallocateInternals () override
	De-allocation method for deleting run-time storage.
void	regridInternals (const int a_lmin, const int a_oldFinestLevel, const int a_newFinestLevel) override
	For regridding internal storage. Does nothing. More...
void	parseOptions () override
	Parse startup options.
void	parseRuntimeOptions () override
	Parse run-time options.
Public Member Functions inherited from Physics::CdrPlasma::CdrPlasmaStepper
	CdrPlasmaStepper ()
	Empty constructor.
	CdrPlasmaStepper (RefCountedPtr< CdrPlasmaPhysics > &a_physics)
	Full constructor. More...
	~CdrPlasmaStepper ()
	Destructor.
virtual void	setupSolvers () override
	Instantiate solvers.
virtual void	allocate () override
	Allocate data for the time stepper and solvers.
virtual void	initialData () override
	Fill all solvers with initial data.
virtual void	postInitialize () override
	Post-initialize operations to be performed after filling solvers with initialData.
virtual void	postCheckpointSetup () override
	Post-initialize operations to be performed after filling solvers with data read from checkpoint files.
virtual void	registerRealms () override
	Register realms to be used for the simulation.
virtual void	registerOperators () override
	Register operators to be used for the simulation.
virtual void	prePlot () override
	Compute some thing that go into plot files.
virtual int	getNumberOfPlotVariables () const override
	Get the number of plot variables for this time stepper. More...
virtual Vector< std::string >	getPlotVariableNames () const override
	Get plot variable names.
virtual void	writePlotData (LevelData< EBCellFAB > &a_output, int &a_icomp, const std::string a_outputRealm, const int a_level) const override
	Write plot data to output holder. More...
virtual void	synchronizeSolverTimes (const int a_step, const Real a_time, const Real a_dt) override
	Synchronize solver times. More...
virtual void	printStepReport () override
	Print a step report. More...
virtual void	preRegrid (const int a_lmin, const int a_oldFinestLevel) override
	Pre-regrid function – this is the one called by Driver. More...
virtual void	preRegridInternals (const int a_lmin, const int a_oldFinestLevel)
	Do a preRegrid operation for internal storage (if needed). More...
virtual void	regrid (const int a_lmin, const int a_oldFinestLevel, const int a_newFinestLevel) override
	Regrid method. More...
virtual void	postRegrid () override
	Perform post-regrid operations. More...
virtual void	computeJ (EBAMRCellData &a_J) const
	Compute the current density. More...
virtual void	computeElectricField (MFAMRCellData &a_electricFieldCell, const MFAMRCellData &a_potential) const
	Compute the cell-centered electric field on both phases. More...
virtual void	computeElectricField (EBAMRCellData &a_electricFieldCell, const phase::which_phase a_phase) const
	Compute the cell-centered electric field on a specific phase using whatever is available in m_fieldSolver. More...
virtual void	computeElectricField (EBAMRCellData &a_E, const phase::which_phase a_phase, const MFAMRCellData &a_potential) const
	Compute the cell-centered electric field on a specific phase. More...
virtual void	computeElectricField (EBAMRFluxData &a_electricFieldFace, const phase::which_phase a_phase, const EBAMRCellData &a_electricFieldCell) const
	Compute the face-centered electric field. This will only do the normal component. More...
virtual void	computeElectricField (EBAMRIVData &a_electricFieldEB, const phase::which_phase a_phase, const EBAMRCellData &a_electricFieldCell) const
	Compute the EB-centered electric field. More...
virtual void	computeMaxElectricField (Real &a_maxElectricField, const phase::which_phase a_phase)
	Compute the maximum of the electric field. More...
virtual Real	getTime () const
	Return time. More...
virtual bool	stationaryRTE ()
	Check if RTE solvers are stationary. More...
virtual void	deallocate ()
	Deallocation function. This will deallocate internal storage in the subclasses as well as the solvers.
virtual void	computeSpaceChargeDensity ()
	Compute the centroid-centered space charge density by using the data inside the CDR solvers. More...
virtual void	computeSpaceChargeDensity (MFAMRCellData &a_rho, const Vector< EBAMRCellData * > &a_cdrDensities)
	Compute the centroid-centered space charge density. More...
virtual void	computeCellConductivity (EBAMRCellData &a_cellConductivity) const
	Compute the cell-centered conductivity. More...
virtual void	computeFaceConductivity (EBAMRFluxData &a_conductivityFace, EBAMRIVData &a_conductivityEB, const EBAMRCellData &a_conductivityCell) const
	Compute the face-centered conductivity from a cell-centered conductivity. More...
virtual void	setupSemiImplicitPoisson (const Real a_dt)
	Set up a semi-implicit Poisson solver. More...
virtual void	setupSemiImplicitPoisson (const EBAMRFluxData &a_conductivityFace, const EBAMRIVData &a_conductivityEB, const Real a_factor)
	Set up a semi-implicit Poisson solver. More...
virtual bool	solvePoisson ()
	Solve the electrostatic Poisson equation. More...
virtual bool	solvePoisson (MFAMRCellData &a_potential, MFAMRCellData &a_rho, const Vector< EBAMRCellData * > a_cdrDensities, const EBAMRIVData &a_sigma)
	General electrostatic Poisson solver routine. More...
virtual void	advanceReactionNetwork (const Real a_time, const Real a_dt)
	Advance the reaction network. This will compute the electric field (on the appropriate phase) and call the other version. More...
virtual void	advanceReactionNetwork (Vector< EBAMRCellData * > &a_cdrSources, Vector< EBAMRCellData * > &a_rteSources, const Vector< EBAMRCellData * > &a_cdrDensities, const Vector< EBAMRCellData * > &a_rteDensities, const EBAMRCellData &a_E, const Real &a_time, const Real &a_dt)
	Compute reaction network source terms. More...
virtual void	advanceReactionNetwork (Vector< EBAMRCellData * > &a_cdrSources, Vector< EBAMRCellData * > &a_rteSources, const Vector< EBAMRCellData * > &a_cdrDensities, const Vector< EBAMRCellData * > &a_cdrGradients, const Vector< EBAMRCellData * > &a_rteDensities, const EBAMRCellData &a_E, const Real &a_time, const Real &a_dt)
	Compute reaction network source terms. This is the AMR version that does all levels. More...
virtual void	advanceReactionNetwork (Vector< LevelData< EBCellFAB > * > &a_cdrSources, Vector< LevelData< EBCellFAB > * > &a_rteSources, const Vector< LevelData< EBCellFAB > * > &a_cdrDensities, const Vector< LevelData< EBCellFAB > * > &a_cdrGradients, const Vector< LevelData< EBCellFAB > * > &a_rteDensities, const LevelData< EBCellFAB > &a_E, const Real &a_time, const Real &a_dt, const int a_level)
	Compute reaction network source terms. This is the level version. More...
virtual void	advanceReactionNetworkRegularCells (Vector< FArrayBox * > &a_cdrSources, Vector< FArrayBox * > &a_rteSources, const Vector< FArrayBox * > &a_cdrDensities, const Vector< FArrayBox * > &a_cdrGradients, const Vector< FArrayBox * > &a_rteDensities, const FArrayBox &a_E, const Real &a_time, const Real &a_dt, const Real &a_dx, const Box &a_cellBox)
	Compute reaction network sources. This is the regular version which does not do the cut-cells. More...
virtual void	advanceReactionNetworkIrreg (Vector< EBCellFAB * > &a_cdrSources, Vector< EBCellFAB * > &a_rteSources, const Vector< EBCellFAB * > &a_cdrDensities, const Vector< EBCellFAB * > &a_cdrGradients, const Vector< EBCellFAB * > &a_cdrVelocities, const Vector< EBCellFAB * > &a_rteDensities, const BaseIVFAB< VoFStencil > &a_interpStencils, const EBCellFAB &a_E, const Real &a_time, const Real &a_dt, const Real &a_dx, const Box &a_cellBox, const int a_lvl, const DataIndex &a_dit)
	Compute reaction network sources. This is the irregular version which only does the cut-cells. More...
virtual void	advanceReactionNetworkIrregInterp (Vector< EBCellFAB * > &a_cdrSources, Vector< EBCellFAB * > &a_rteSources, const Vector< EBCellFAB * > &a_cdrDensities, const Vector< EBCellFAB * > &a_cdrGradients, const Vector< EBCellFAB * > &a_cdrVelocities, const Vector< EBCellFAB * > &a_rteDensities, const BaseIVFAB< VoFStencil > &a_interpStencils, const EBCellFAB &a_E, const Real &a_time, const Real &a_dt, const Real &a_dx, const Box &a_box, const int a_lvl, const DataIndex &a_dit)
	Compute reaction network sources. This version interpolates everything to the centroid and runs with that data. More...
virtual void	advanceReactionNetworkIrregKappa (Vector< EBCellFAB * > &a_cdrSources, Vector< EBCellFAB * > &a_rteSources, const Vector< EBCellFAB * > &a_cdrDensities, const Vector< EBCellFAB * > &a_cdrGradients, const Vector< EBCellFAB * > &a_rteDensities, const BaseIVFAB< VoFStencil > &a_interpStencils, const EBCellFAB &a_E, const Real &a_time, const Real &a_dt, const Real &a_dx, const Box &a_box, const int a_lvl, const DataIndex &a_dit)
	Compute reaction network sources. This version assumes that some of the inputs are on the centroid. More...
virtual void	advanceReactionNetworkIrregUpwind (Vector< EBCellFAB * > &a_cdrSources, Vector< EBCellFAB * > &a_rteSources, const Vector< EBCellFAB * > &a_cdrDensities, const Vector< EBCellFAB * > &a_cdrGradients, const Vector< EBCellFAB * > &a_cdrVelocities, const Vector< EBCellFAB * > &a_rteDensities, const BaseIVFAB< VoFStencil > &a_interpStencils, const EBCellFAB &a_E, const Real &a_time, const Real &a_dt, const Real &a_dx, const Box &a_box, const int a_lvl, const DataIndex &a_dit)
	Compute reaction network sources. More...
virtual void	computeCdrDiffusion ()
	Compute diffusion things using whatever is available in the solvers. More...
virtual void	computeCdrDiffusion (const EBAMRCellData &a_electricFieldCell, const EBAMRIVData &a_electricFieldEB)
	Compute diffusion things using whatever is available in the solvers. This version uses the input electric fields. More...
virtual void	computeCdrDiffusionCell (Vector< EBAMRCellData > &a_cdrDcoCell, const Vector< EBAMRCellData * > &a_cdrDensities, const EBAMRCellData &a_electricFieldCell, const Real &a_time)
	Compute CDR diffusion coefficients on cell centers. This will call the level version. More...
virtual void	computeCdrDiffusionCell (Vector< LevelData< EBCellFAB > * > &a_cdrDcoCell, const Vector< LevelData< EBCellFAB > * > &a_cdrDensities, const LevelData< EBCellFAB > &a_electricFieldCell, const int a_lvl, const Real &a_time)
	Compute diffusion coefficients. This is the level version and it will iterate through grid patches. More...
virtual void	computeCdrDiffusionCellRegular (Vector< FArrayBox * > &a_cdrDcoCell, const Vector< FArrayBox * > &a_cdrDensities, const FArrayBox &a_electricFieldCell, const Box a_cellBox, const Real a_dx, const Real a_time)
	Compute diffusion coefficients on cell centers. This does all the regular cells. More...
virtual void	computeCdrDiffusionCellIrregular (Vector< EBCellFAB * > &a_cdrDcoCell, const Vector< EBCellFAB * > &a_cdrDensities, const EBCellFAB &a_electricFieldCell, const Real a_dx, const Real &a_time, const int a_lvl, const DataIndex &a_dit)
	Compute diffusion coefficients on cell centers. This version does the irregular cells. More...
virtual void	computeCdrDiffusionFace (Vector< EBAMRFluxData * > &a_cdrDcoFace, const Vector< EBAMRCellData * > &a_cdrDensities, const EBAMRCellData &a_electricFieldCell, const Real &a_time)
	Compute diffusion coefficients on face centers. More...
virtual void	computeCdrDiffusionEb (Vector< EBAMRIVData * > &a_cdrDcoEB, const Vector< EBAMRIVData * > &a_cdrDensitiesEB, const EBAMRIVData &a_electricFieldEB, const Real &a_time)
	Compute diffusion coefficients on the EB. This is the AMR version – it will call the level version. More...
virtual void	computeCdrDiffusionEb (Vector< LevelData< BaseIVFAB< Real >> * > &a_cdrDcoEB, const Vector< LevelData< BaseIVFAB< Real >> * > &a_cdrDensitiesEB, const LevelData< BaseIVFAB< Real >> &a_electricFieldEB, const Real &a_time, const int a_lvl)
	Compute diffusion coefficients on the EB. This is a level version but it will go through all patches. More...
virtual void	computeCdrDriftVelocities ()
	Compute the CDR drift velocities. More...
virtual void	computeCdrDriftVelocities (Vector< EBAMRCellData * > &a_velocities, const Vector< EBAMRCellData * > &a_cdrDensities, const EBAMRCellData &a_E, const Real &a_time)
	Compute the cell-centered CDR velocities. This will call the level version. More...
virtual void	computeCdrDriftVelocities (Vector< LevelData< EBCellFAB > * > &a_cdrVelocities, const Vector< LevelData< EBCellFAB > * > &a_cdrDensities, const LevelData< EBCellFAB > &a_electricField, const int a_lvl, const Real &a_time)
	Compute the cell-centered CDR velocities. More...
virtual void	computeCdrDriftVelocitiesRegular (Vector< FArrayBox * > &a_cdrVelocities, const Vector< FArrayBox * > &a_cdrDensities, const FArrayBox &a_electricField, const Box &a_cellBox, const Real &a_time, const Real &a_dx)
	Compute the cell-centered CDR velocities. More...
virtual void	computeCdrDriftVelocitiesIrregular (Vector< EBCellFAB * > &a_velocities, const Vector< EBCellFAB * > &a_cdrDensities, const EBCellFAB &a_electricField, const Real &a_time, const Real &a_dx, const int a_lvl, const DataIndex &a_dit)
	Compute the cell-centered CDR velocities. More...
virtual void	computeCdrFluxes (Vector< EBAMRIVData * > &a_cdrFluxesEB, const Vector< EBAMRIVData * > &a_extrapCdrFluxes, const Vector< EBAMRIVData * > &a_extrapCdrDensities, const Vector< EBAMRIVData * > &a_extrapCdrVelocities, const Vector< EBAMRIVData * > &a_extrapCdrGradients, const Vector< EBAMRIVData * > &a_extrapRteFluxes, const EBAMRIVData &a_electricField, const Real &a_time)
	Compute CDR fluxes on the EB. This is the AMR version – it will call the level version. More...
virtual void	computeCdrFluxes (Vector< LevelData< BaseIVFAB< Real >> * > &a_cdrFluxesEB, const Vector< LevelData< BaseIVFAB< Real >> * > &a_extrapCdrFluxes, const Vector< LevelData< BaseIVFAB< Real >> * > &a_extrapCdrDensities, const Vector< LevelData< BaseIVFAB< Real >> * > &a_extrapCdrVelocities, const Vector< LevelData< BaseIVFAB< Real >> * > &a_extrapCdrGradients, const Vector< LevelData< BaseIVFAB< Real >> * > &a_extrapRteFluxes, const LevelData< BaseIVFAB< Real >> &a_electricField, const Real &a_time, const int a_lvl)
	Compute CDR fluxes on the EB. This is the level version which will fill EB fluxes on both electrode and dielectric cells. More...
virtual void	computeCdrDomainFluxes (Vector< EBAMRIFData * > &a_cdrFluxes, const Vector< EBAMRIFData * > &a_extrapCdrFluxes, const Vector< EBAMRIFData * > &a_extrapCdrDensities, const Vector< EBAMRIFData * > &a_extrapCdrVelocities, const Vector< EBAMRIFData * > &a_extrapCdrGradients, const Vector< EBAMRIFData * > &a_extrapRteFluxes, const EBAMRIFData &a_field, const Real &a_time)
	Compute CDR fluxes on domain faces for usage in boundary conditions. This is the AMR version. More...
virtual void	computeCdrDomainFluxes (Vector< LevelData< DomainFluxIFFAB > * > a_cdrFluxes, const Vector< LevelData< DomainFluxIFFAB > * > &a_extrapCdrFluxes, const Vector< LevelData< DomainFluxIFFAB > * > &a_extrapCdrDensities, const Vector< LevelData< DomainFluxIFFAB > * > &a_extrapCdrVelocities, const Vector< LevelData< DomainFluxIFFAB > * > &a_extrapCdrGradients, const Vector< LevelData< DomainFluxIFFAB > * > &a_extrapRteFluxes, const LevelData< DomainFluxIFFAB > &a_electricField, const Real &a_time, const int a_lvl)
	Compute CDR fluxes on domain faces for usage in boundary conditions. This is the level version. More...
virtual void	computeExtrapolatedFluxes (Vector< EBAMRIVData * > &a_extrapCdrFluxesEB, const Vector< EBAMRCellData * > a_cdrDensities, const Vector< EBAMRCellData * > a_cdrVelocities, const phase::which_phase a_phase)
	Extrapolate cell-centered fluxes to the EB centroid. More...
virtual void	computeExtrapolatedDomainFluxes (Vector< EBAMRIFData * > &a_cdrDomainFluxes, const Vector< EBAMRCellData * > a_cdrDensities, const Vector< EBAMRCellData * > a_cdrVelocities, const phase::which_phase a_phase)
	Extrapolate drift fluxes to domain faces. More...
virtual void	computeExtrapolatedVelocities (Vector< EBAMRIVData * > &a_cdrVelocitiesEB, const Vector< EBAMRCellData * > a_cdrVelocitiesCell, const phase::which_phase a_phase)
	Extrapolated cell-centered velocities to the EB. More...
virtual void	deallocateSolverInternals ()
	Deallocate internal solver storages.
virtual void	extrapolateToEb (Vector< EBAMRIVData * > &a_ebData, const phase::which_phase a_phase, const Vector< EBAMRCellData * > &a_cellData)
	Extrapolated cell-centered data to the EB. This is the AMR version for all species. More...
virtual void	extrapolateToEb (EBAMRIVData &a_ebData, const phase::which_phase a_phase, const EBAMRCellData &a_cellData)
	Extrapolated cell-centered data to the EB. This is the AMR version. More...
virtual void	extrapolateToEb (LevelData< BaseIVFAB< Real >> &a_ebData, const phase::which_phase a_phase, const LevelData< EBCellFAB > &a_cellData, const int a_lvl)
	Extrapolated cell-centered data to the EB. This is the level version. More...
virtual void	extrapolateToDomainFaces (Vector< EBAMRIFData * > &a_domainData, const phase::which_phase a_phase, const Vector< EBAMRCellData * > &a_cellData)
	Extrapolate cell-centered data to domain faces. This is the AMR version that does all species. More...
virtual void	extrapolateToDomainFaces (EBAMRIFData &a_domainData, const phase::which_phase a_phase, const EBAMRCellData &a_cellData)
	Extrapolate cell-centered data to domain faces. This is the AMR version. More...
virtual void	extrapolateToDomainFaces (LevelData< DomainFluxIFFAB > &a_domainData, const phase::which_phase a_phase, const LevelData< EBCellFAB > &a_cellData, const int a_lvl)
	Extrapolate cell-centered data to domain faces. This is the AMR version. More...
virtual void	extrapolateVectorToDomainFaces (Vector< EBAMRIFData * > &a_domainData, const phase::which_phase a_phase, const Vector< EBAMRCellData * > &a_cellData)
	Extrapolate vector data to domain faces. This is the AMR version that does all species. More...
virtual void	extrapolateVectorToDomainFaces (EBAMRIFData &a_domainData, const phase::which_phase a_phase, const EBAMRCellData &a_cellData)
	Extrapolate vector data to domain faces. This is the AMR version. More...
virtual void	extrapolateVelocitiesToDomainFaces (Vector< EBAMRIFData * > &a_domainVelocities, const phase::which_phase a_phase, const Vector< EBAMRCellData * > &a_cellVelocities)
	Extrapolate velocities data to domain faces. This is the AMR version that does all species. More...
virtual void	getCdrMax (Real &a_cdrMax, std::string &a_solverName) const
	Get maximum density in the CDR species. This will fetch both the value and the solver name. More...
virtual void	initialSigma ()
	Initialize the surface charge.
virtual void	projectFlux (EBAMRIVData &a_projectedFlux, const EBAMRIVData &a_flux)
	Project a flux onto the EB normal. This is the AMR version. More...
virtual void	projectFlux (LevelData< BaseIVFAB< Real >> &a_projectedFlux, const LevelData< BaseIVFAB< Real >> &a_flux, const int a_lvl)
	Project a flux onto the EB normal. This is the level version. More...
virtual void	projectDomain (EBAMRIFData &a_projectedFlux, const EBAMRIFData &a_flux)
	Project flux onto domain edges/faces. More...
virtual void	regridSolvers (const int a_lmin, const int a_oldFinestLevel, const int a_newFinestLevel)
	Regrid all of our solvers. More...
virtual void	resetDielectricCells (EBAMRIVData &a_data) const
	Set data defined over dielectric cells to zero. More...
virtual void	sanityCheck () const
	Do a sanity check. Only works when DEBUG=TRUE.
virtual void	setupCdr ()
	Setup the CDR solvers.
virtual void	setupPoisson ()
	Setup the field solver.
virtual void	setupRadiativeTransfer ()
	Setup the RTE solvers.
virtual void	setupSigma ()
	Set up the surface charge solver.
virtual void	setSolverVerbosity ()
	Set solver verbosity. More...
virtual void	solverDump ()
	All solvers writes plot files. These are not the same as the plot files written by Driver.
virtual void	setVoltage (std::function< Real(const Real a_time)> a_voltage)
	Set voltage curve. More...
virtual void	solveRadiativeTransfer (const Real a_dt)
	Solve the radiative transfer problem. More...
virtual void	setCdrSolvers (RefCountedPtr< CdrLayout< CdrSolver >> &a_cdr)
	Set the CDR layout. More...
virtual void	setFieldSolver (RefCountedPtr< FieldSolver > &a_fieldSolver)
	Set the field solver. More...
virtual void	setRadiativeTransferSolvers (RefCountedPtr< RtLayout< RtSolver >> &a_rte)
	Set the RTE solvers. More...
virtual Real	computeElectrodeCurrent ()
	Compute the ohmic current on electrodes. More...
virtual Real	computeDielectricCurrent ()
	Compute the ohmic current on dielectrics. More...
virtual Real	computeDomainCurrent ()
	Compute the ohmic current through the domain faces. More...
virtual Real	computeOhmicInductionCurrent ()
	Compute induced current in external circuit due to ohmic conduction. More...
virtual Real	computeRelaxationTime ()
	Compute the relaxation time as dt = eps0/conductivity.
virtual Real	getDt ()
	Get dt.
Public Member Functions inherited from TimeStepper
	TimeStepper ()
	Default constructor (does nothing)
virtual	~TimeStepper ()
	Default destructor (does nothing)
void	setAmr (const RefCountedPtr< AmrMesh > &a_amr)
	Set AmrMesh. More...
void	setComputationalGeometry (const RefCountedPtr< ComputationalGeometry > &a_computationalGeometry)
	Set the computational geometry. More...
virtual void	postPlot ()
	An option for calling special functions prior to plotting data. Called by Driver in the IMMEDIATELY after writing the plot file.
virtual Vector< long int >	getCheckpointLoads (const std::string a_realm, const int a_level) const
	Get computational loads to be checkpointed. More...
virtual bool	needToRegrid ()
	Fuction which can have Driver do regrids at arbitrary points in the simulation. More...
virtual bool	loadBalanceThisRealm (const std::string a_realm) const
	Load balancing query for a specified realm. If this returns true for a_realm, load balancing routines will be called during regrids. More...
virtual void	loadBalanceBoxes (Vector< Vector< int >> &a_procs, Vector< Vector< Box >> &a_boxes, const std::string a_realm, const Vector< DisjointBoxLayout > &a_grids, const int a_lmin, const int a_finestLevel)
	Load balance grid boxes for a specified realm. More...

Protected Member Functions
RefCountedPtr< CdrStorage > &	getCdrStorage (const CdrIterator< CdrSolver > &a_solverit)
RefCountedPtr< RtStorage > &	getRtStorage (const RtIterator< RtSolver > &a_solverit)
void	allocateCdrStorage ()
void	allocateFieldStorage ()
void	allocateRtStorage ()
void	allocateSigmaStorage ()
Vector< EBAMRCellData * >	getCdrSolversPhiK (const int a_m)
EBAMRIVData &	getSigmaSolverK (const int a_m)
void	setupQuadratureNodes (const int a_p)
void	setupUniformNodes (const int a_p)
void	setupLobattoNodes (const int a_p)
void	setupChebyshevNodes (const int a_p)
void	setupQmj (const int a_p)
void	setupSubintervals (const Real a_time, const Real a_dt)
void	quad (EBAMRCellData &a_quad, const Vector< EBAMRCellData > &a_integrand, const int a_m)
void	quad (EBAMRIVData &a_quad, const Vector< EBAMRIVData > &a_integrand, const int a_m)
void	copyCdrToPhiM0 ()
void	copySigmaToM0 ()
void	copyPhiPToCdr ()
void	copySigmaPToSigma ()
void	integrateRtTransient (const Real a_dt)
void	integrateRtStationary ()
void	integrate (const Real a_dt, const Real a_time, const bool a_lagged_terms)
void	integrateAdvectionReaction (const Real a_dt, const int a_m, const bool a_lagged_terms)
void	integrateAdvection (const Real a_dt, const int a_m, const bool a_lagged_terms)
void	integrateDiffusion (const Real a_dt, const int a_m, const bool a_lagged_terms)
Vector< EBAMRCellData * >	getCdrErrors ()
	Get errors for CDR equations.
void	reconcileIntegrands ()
void	computeFD0 ()
void	initializeErrors ()
void	finalizeErrors ()
void	computeNewDt (bool &a_accept_step, const Real a_dt, const int a_num_corrections)
void	adaptiveReport (const Real a_first_dt, const Real a_dt, const Real a_new_dt, const int a_corr, const int a_rej, const Real a_max_err)
void	updateField ()
void	updateField (const Vector< EBAMRCellData * > &a_densities, const EBAMRIVData &a_sigma)
void	updateDiffusionCoefficients ()
void	storeSolvers ()
void	restoreSolvers ()
void	computeReactionNetwork (const int a_m, const Real a_time, const Real a_dt)
void	computeElectricFieldIntoScratch ()
void	computeCdrEbStates ()
void	computeCdrEbStates (const Vector< EBAMRCellData * > &a_phis)
void	computeCdrDomainStates ()
void	computeCdrDomainStates (const Vector< EBAMRCellData * > &a_phis)
void	computeCdrGradients ()
void	computeCdrGradients (const Vector< EBAMRCellData * > &a_phis)
void	computeCdrFluxes (const Real a_time)
void	computeCdrFluxes (const Vector< EBAMRCellData * > &a_phis, const Real a_time)
void	computeCdrDomainFluxes (const Real a_time)
void	computeCdrDomainFluxes (const Vector< EBAMRCellData * > &a_phis, const Real a_time)
void	computeCdrVelo (const Real a_time)
void	computeCdrVelo (const Vector< EBAMRCellData * > &a_phis, const Real a_time)
Real	computeDt () override
	Compute the time step. More...
void	computeSigmaFlux ()
Real	getMaxError ()
Real	getMaxNodeDistance ()
void	writeStepProfile (const Real a_dt, const Real a_error, const int a_substeps, const int a_corrections, const int a_rejections)
void	parseNodes ()
void	parseDiffusionCoupling ()
void	parseAdaptiveOptions ()
void	parseDebugOptions ()
void	parseAdvectionOptions ()
Protected Member Functions inherited from Physics::CdrPlasma::CdrPlasmaStepper
virtual void	parseVerbosity ()
	Parse class verbosity.
virtual void	parseSolverVerbosity ()
	Parse solver verbosities.
virtual void	parseCFL ()
	Parse the CFL number.
virtual void	parseRelaxationTime ()
	Parse the relaxation time restriction.
virtual void	parseMinDt ()
	Parse the minimum allowed time step.
virtual void	parseMaxDt ()
	Parse the maximum allowed time step.
virtual void	parseFastPoisson ()
	Parse the "fast poisson" method, i.e. how often we solve the Poisson equation.
virtual void	parseFastRadiativeTransfer ()
	Parse the "fast rte" method, i.e. how often we solve the Poisson equation.
virtual void	parseSourceComputation ()
	Parse how we compute the source terms. More...
virtual void	writeJ (LevelData< EBCellFAB > &a_output, int &a_comp, const std::string a_outputRealm, const int a_level) const
	Compute and put the current density in output data holder. More...
virtual void	computePhysicsPlotVars (EBAMRCellData &a_physicsPlotVars) const noexcept
	Calculate the user-supplied plot variables.
virtual void	writeData (LevelData< EBCellFAB > &a_output, int &a_comp, const EBAMRCellData &a_data, const std::string a_outputRealm, const int a_level, const bool a_interpToCentroids, const bool a_interpGhost) const noexcept
	Write data to output. Convenience function. More...

Protected Attributes
Vector< RefCountedPtr< CdrStorage > >	m_cdrScratch
	Scratch storage for the CDR solvers.
Vector< RefCountedPtr< RtStorage > >	m_rteScratch
	Scratch storage for the radiative transfer solvers.
RefCountedPtr< FieldStorage >	m_fieldScratch
	Scratch storage for the field solver.
RefCountedPtr< SigmaStorage >	m_sigmaScratch
	Scratch storage for the surface charge solver.
int	m_maxRetries
	Maximum number of retries when using adaptive time steps.
int	m_p
	Number of subintervals in the SDC discretization.
int	m_k
	Number of correction for the SDC discretization.
int	m_errorNorm
	Error norm to use when using adaptive time steps.
int	m_minCorr
	Minimum number of SDC corrections.
int	m_errorIdx
	The species error index – allows us to restrict error evaluation and adaptive times stepping to a specified species. More...
Real	m_maxDtGrowth
	Maximum growth factor for the time step when using adaptive stepping.
Real	m_minCFL
Real	m_maxCFL
Real	m_errThresh
Real	m_safety
Real	m_decreaseSafety
Real	m_newDt
Real	m_extrapDt
bool	m_extrapAdvect
bool	m_adaptiveDt
bool	m_printReport
bool	m_haveError
bool	m_useTGA
bool	m_doAdvectionSource
bool	m_doDiffusion
bool	m_doPoisson
bool	m_doRTE
bool	m_computeD
bool	m_computeV
bool	m_computeS
bool	m_consistentE
bool	m_consistentRTE
bool	m_haveDtErr
bool	m_profileSteps
Vector< Real >	m_cdrError
Real	m_sigmaError
Real	m_maxError
Real	m_preError
Vector< Vector< Real > >	m_qmj
Vector< Vector< Real > >	m_vandermonde
Vector< Real >	m_nodes
Vector< Real >	m_tm
Vector< Real >	m_dtm
std::string	m_whichNodes
Protected Attributes inherited from Physics::CdrPlasma::CdrPlasmaStepper
std::string	m_realm
	Realm where the time stepper is registered. More...
std::string	m_className
	Time stepper class name.
phase::which_phase	m_phase
	Plasma phase.
SourceTermComputation	m_whichSourceTermComputation
	Which source term computation.
RefCountedPtr< MultiFluidIndexSpace >	m_multifluidIndexSpace
	Index space.
RefCountedPtr< CdrPlasmaPhysics >	m_physics
	Plasma kinetics.
RefCountedPtr< CdrLayout< CdrSolver > >	m_cdr
	CDR solvers.
RefCountedPtr< RtLayout< RtSolver > >	m_rte
	Radiative transfer solvers.
RefCountedPtr< FieldSolver >	m_fieldSolver
	Poisson solver.
RefCountedPtr< SurfaceODESolver< 1 > >	m_sigma
	Surface charge solver.
EBAMRCellData	m_currentDensity
	Storage for the current.
EBAMRCellData	m_physicsPlotVars
	Storage for physics-observables.
std::function< Real(const Real a_time)>	m_voltage
	Set the potential.
Real	m_minDt
	Minimum allowed time step.
Real	m_maxDt
	Maximum allowed time step.
Real	m_cfl
	CFL number.
Real	m_relaxTime
	Fudge factor for relaxation time.
Real	m_time
	TIme.
Real	m_dt
	Previous time step size.
Real	m_dtCFL
	Computed CFL time step.
TimeCode	m_timeCode
	Time code for step restriction.
int	m_solverVerbosity
	Verbosity for solvers.
int	m_fastRTE
	Fast RTE solver.
int	m_fastPoisson
	Fast RTE solver.
int	m_upwindFactor
	Upwind factor.
Protected Attributes inherited from TimeStepper
int	m_verbosity
	Class verbosity.
int	m_timeStep
	Time step.
Real	m_time
	TIme.
Real	m_dt
	Previous time step size.
RefCountedPtr< AmrMesh >	m_amr
	AmrMesh.
RefCountedPtr< ComputationalGeometry >	m_computationalGeometry
	Computational geometry.

Additional Inherited Members
Protected Types inherited from Physics::CdrPlasma::CdrPlasmaStepper
enum class	SourceTermComputation { Interpolated , InterpolatedStable , CellAverage , Upwind }
	Enum for switching between source term computations. 'Interpolated' interpolates the cell-centered data to cell centroids. InterpolatedStable is the same as Interpolated but with a stability fix near inflow EBs. CellAverage assumes centroid-centered data, and Upwind uses the upwind formulation in Villa et. al.
enum class	TimeCode {   Advection , Diffusion , AdvectionDiffusion , Source ,   RelaxationTime , Restricted , Hardcap , Error ,   Physics }
	An enum for encapsulating how time steps were restricted.

Detailed Description

Class for evolving plasma equations using implicit-explicit spectral deferred corrections.

Constructor & Destructor Documentation

CdrPlasmaImExSdcStepper()

CdrPlasmaImExSdcStepper::CdrPlasmaImExSdcStepper

(

RefCountedPtr< CdrPlasmaPhysics > &

a_physics

)

Full constructor.

Parameters

[in]

a_physics

Reference to plasma physics object

Member Function Documentation

advance()

Real CdrPlasmaImExSdcStepper::advance ( const Real  a_dt )

overridevirtual

Advance method. Implements the ImEx SDC algorithm.

Parameters

[in]

a_dt

Tried time step

Returns

Time step used (can be different from a_dt if using adaptive stepping).

Implements Physics::CdrPlasma::CdrPlasmaStepper.

allocateInternals()

void CdrPlasmaImExSdcStepper::allocateInternals ( )

overridevirtual

Allocation method for setting up internal storage.

This will set up the various storages for the SDC terms.

Implements Physics::CdrPlasma::CdrPlasmaStepper.

computeDt()

Real CdrPlasmaImExSdcStepper::computeDt ( )

overrideprotectedvirtual

Compute the time step.

Subclasses must implement this one.

Implements Physics::CdrPlasma::CdrPlasmaStepper.

regridInternals()

void CdrPlasmaImExSdcStepper::regridInternals ( const int  a_lmin, const int  a_oldFinestLevel, const int  a_newFinestLevel  )

overridevirtual

For regridding internal storage. Does nothing.

Parameters

[in]	a_lmin	The coarsest level that changed.
[in]	a_oldFinestLevel	The finest level before the regrid.
[in]	a_newFinestLevel	The finest level after the regrid.

Implements Physics::CdrPlasma::CdrPlasmaStepper.

Member Data Documentation

m_errorIdx

int Physics::CdrPlasma::CdrPlasmaImExSdcStepper::m_errorIdx

protected

The species error index – allows us to restrict error evaluation and adaptive times stepping to a specified species.

If m_errorIdx < 0 we do all species.

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The documentation for this class was generated from the following files:

• Physics/CdrPlasma/Timesteppers/CdrPlasmaImExSdcStepper/CD_CdrPlasmaImExSdcStepper.H
• Physics/CdrPlasma/Timesteppers/CdrPlasmaImExSdcStepper/CD_CdrPlasmaImExSdcStepper.cpp