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| CdrStorage () |
| | Default constructor. Leaves all members uninitialised; call allocateStorage() after construction.
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| | CdrStorage (const RefCountedPtr< AmrMesh > &a_amr, const std::string &a_realm, const phase::which_phase a_phase, const int a_ncomp) |
| | Full constructor.
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| ~CdrStorage () |
| | Destructor.
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| void | allocateStorage (const int a_p) |
| | Allocate all scratch arrays sized for p+1 SDC nodes.
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void | deallocateStorage () |
| | Deallocate all scratch arrays.
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| EBAMRCellData & | getScratch () |
| | Return the first cell-centered scratch array (one component).
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| EBAMRCellData & | getScratch2 () |
| | Return the second cell-centered scratch array (one component).
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| EBAMRCellData & | getError () |
| | Return the error estimator array (one component, cell-centered).
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| EBAMRCellData & | getGradient () |
| | Return the cell-centered gradient storage (SpaceDim components).
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| EBAMRCellData & | getOld () |
| | Return the "old solution" array used when subcycling is enabled.
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| EBAMRCellData & | getScratchD () |
| | Return the SpaceDim-component cell-centered scratch array.
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| EBAMRCellData & | getDivF () |
| | Return the divergence of the advective flux (cell-centered, one component).
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| Vector< EBAMRCellData > & | getPhi () |
| | Return the phi^k solution at all p+1 SDC nodes.
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| Vector< EBAMRCellData > & | getFAR () |
| | Return the explicit advection-reaction operator F_AR^k at all p+1 nodes.
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| Vector< EBAMRCellData > & | getFD () |
| | Return the implicit diffusion operator F_D^k at all p+1 nodes.
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| Vector< EBAMRCellData > & | getF () |
| | Return the combined operator F^k = F_AR^k + F_D^k at all p+1 nodes.
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| EBAMRIVData & | getEbScratch1 () |
| | Return the first EB-centered scratch array (one component).
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| EBAMRIVData & | getEbScratchD () |
| | Return the SpaceDim-component EB-centered scratch array.
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| EBAMRIVData & | getEbState () |
| | Return the EB-centered species density (extrapolated from the cell center).
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| EBAMRIVData & | getEbVelo () |
| | Return the EB-centered normal drift velocity.
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| EBAMRIVData & | getEbFlux () |
| | Return the EB-centered boundary flux (outward positive).
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| EBAMRIVData & | getEbGrad () |
| | Return the EB-centered normal density gradient.
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| EBAMRIFData & | getDomainState () |
| | Return the domain-face-centered species density (extrapolated from the cell center).
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| EBAMRIFData & | getDomainVelo () |
| | Return the domain-face-centered normal drift velocity.
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| EBAMRIFData & | getDomainFlux () |
| | Return the domain-face-centered boundary flux (inward positive).
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| EBAMRIFData & | getDomainGrad () |
| | Return the domain-face-centered normal density gradient.
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std::string | m_realm |
| | Realm on which storage is allocated.
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RefCountedPtr< AmrMesh > | m_amr |
| | AMR mesh used for allocation.
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phase::which_phase | m_phase |
| | Phase on which storage is allocated.
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int | m_ncomp |
| | Number of scalar components (1 for CDR species).
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int | m_p |
| | Number of SDC subintervals (p+1 nodes).
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bool | m_subcycle |
| | If true, extra subcycling storage is allocated.
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EBAMRCellData | m_scratch |
| | First general-purpose cell-centered scratch array.
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EBAMRCellData | m_scratch2 |
| | Second general-purpose cell-centered scratch array.
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EBAMRCellData | m_error |
| | Cell-centered error estimator: |phi^{k+1} - phi^k|.
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EBAMRCellData | m_gradient |
| | Cell-centered gradient of the species density (SpaceDim components).
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EBAMRCellData | m_old |
| | Cell-centered solution at the start of the step. Used for subcycling.
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EBAMRCellData | m_scratchD |
| | SpaceDim-component cell-centered scratch array.
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EBAMRCellData | m_divF |
| | Cell-centered divergence of the advective flux.
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Vector< EBAMRCellData > | m_phi |
| | phi^k at each of the p+1 SDC nodes. Index m ∈ [0, p].
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Vector< EBAMRCellData > | m_FAR |
| | Explicit advection-reaction operator F_AR(phi^k) at each node. Index m ∈ [0, p].
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Vector< EBAMRCellData > | m_FD |
| | Implicit diffusion operator F_D(phi^k) at each node. Index m ∈ [0, p].
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Vector< EBAMRCellData > | m_F |
| | Combined operator F = F_AR + F_D at each node. Index m ∈ [0, p].
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EBAMRIVData | m_scratchIVs |
| | EB-centered scalar scratch array (one component, e.g. for diffusion states).
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EBAMRIVData | m_scratchIVD |
| | EB-centered SpaceDim-component scratch array.
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EBAMRIVData | m_scratchIV1 |
| | EB-centered species density extrapolated from the cell center.
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EBAMRIVData | m_scratchIV2 |
| | EB-centered normal drift velocity component.
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EBAMRIVData | m_scratchIV3 |
| | EB-centered boundary flux.
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EBAMRIVData | m_scratchIV4 |
| | EB-centered normal density gradient.
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EBAMRIFData | m_scratchIF1 |
| | Domain-face-centered species density extrapolated from the cell center.
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EBAMRIFData | m_scratchIF2 |
| | Domain-face-centered normal drift velocity component.
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EBAMRIFData | m_scratchIF3 |
| | Domain-face-centered boundary flux.
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EBAMRIFData | m_scratchIF4 |
| | Domain-face-centered normal density gradient.
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Per-CDR-species scratch storage for the IMEX-SDC time stepper.
Holds all AMR data arrays needed to advance a single CDR species through the SDC integration: the phi^k solution at each of the p+1 quadrature nodes, the explicit advection-reaction operator F_AR^k, the implicit diffusion operator F_D^k, the combined operator F^k = F_AR^k + F_D^k, and auxiliary arrays for gradient computation, EB/domain state extrapolation, and error estimation.
