Class that uses a slope limited method for advection, in combination with corner transport upwind (CTU).
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| CdrCTU () |
| | Default constructor.
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virtual | ~CdrCTU () |
| | Destructor (does nothing)
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| virtual void | parseOptions () override |
| | Parse class options to put object in usable state.
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| virtual void | parseRuntimeOptions () override |
| | Parse runtime options.
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| virtual void | advectToFaces (EBAMRFluxData &a_facePhi, const EBAMRCellData &a_cellPhi, const Real a_dt) override |
| | MUSCL advection to faces.
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| virtual Real | computeAdvectionDt () override |
| | Compute the largest possible advective time step (for explicit methods).
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| virtual void | allocate () override |
| | Allocate internal storage and build pre-built VoF iterators.
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| virtual void | regrid (const int a_lbase, const int a_oldFinestLevel, const int a_newFinestLevel) override |
| | Regrid method — also rebuilds the grown VoF iterators.
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| virtual void | preRegrid (const int a_lbase, const int a_oldFinestLevel) override |
| | Pre-regrid hook — releases the grown VoF iterators.
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| CdrMultigrid () |
| | Constructor.
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virtual | ~CdrMultigrid () |
| | Destructor.
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| virtual void | registerOperators () override |
| | Register operator.
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| virtual void | computeDivJ (EBAMRCellData &a_divJ, EBAMRCellData &a_phi, const Real a_extrapDt, const bool a_conservativeOnly, const bool a_ebFlux, const bool a_domainFlux) override final |
| | Compute div(J) explicitly, where J = nV - D*grad(n).
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| virtual void | computeDivF (EBAMRCellData &a_divF, EBAMRCellData &a_phi, const Real a_extrapDt, const bool a_conservativeOnly, const bool a_ebFlux, const bool a_domainFlux) override final |
| | Compute div(v*phi) explicitly.
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| virtual void | computeDivD (EBAMRCellData &a_divD, EBAMRCellData &a_phi, const bool a_conservativeOnly, const bool a_ebFlux, const bool a_domainFlux) override final |
| | Compute div(D*grad(phi)) explicitly.
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| virtual void | advanceEuler (EBAMRCellData &a_newPhi, const EBAMRCellData &a_oldPhi, const EBAMRCellData &a_source, const Real a_dt) override final |
| | Implicit diffusion Euler advance with source term.
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| virtual void | advanceCrankNicholson (EBAMRCellData &a_newPhi, const EBAMRCellData &a_oldPhi, const EBAMRCellData &a_source, const Real a_dt) override final |
| | Implicit diffusion Crank-Nicholson advance with source term.
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| | CdrSolver () |
| | Default constructor.
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| | CdrSolver (const CdrSolver &a_other)=delete |
| | Disallowed copy constructor.
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| | CdrSolver (const CdrSolver &&a_other)=delete |
| | Disallowed move constructor.
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| CdrSolver & | operator= (const CdrSolver &a_other)=delete |
| | Disallowed assignment operator.
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| CdrSolver & | operator= (const CdrSolver &&a_other)=delete |
| | Disallowed move assignment operator.
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virtual | ~CdrSolver () |
| | Constructor.
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| void | setDefaultDomainBC () |
| | This sets default boundary conditions (wall type).
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| void | setDomainBcType (const CdrDomainBC::DomainSide a_domainSide, const CdrDomainBC::BcType a_bcType) |
| | Set domain bc type on domain side.
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| void | setDomainBcFunction (const CdrDomainBC::DomainSide a_domainSide, const CdrDomainBC::FluxFunction &a_fluxFunction) |
| | Set domain bc function on particular domain side.
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| virtual void | advanceEuler (EBAMRCellData &a_newPhi, const EBAMRCellData &a_oldPhi, const Real a_dt) |
| | Implicit diffusion Euler advance without source term.
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| virtual void | advanceCrankNicholson (EBAMRCellData &a_newPhi, const EBAMRCellData &a_oldPhi, const Real a_dt) |
| | Implicit diffusion Crank-Nicholson advance without source term.
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| virtual void | computeDivG (EBAMRCellData &a_divG, EBAMRFluxData &a_G, const EBAMRIVData &a_ebFlux, const bool a_conservativeOnly) |
| | Compute div(G) where G is a general face-centered flux on face centers and EB centers. This can involve mass redistribution.
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| virtual void | gwnDiffusionSource (EBAMRCellData &a_noiseSource, const EBAMRCellData &a_cellPhi) |
| | Compute a random gaussian white noise source term.
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| virtual void | averageVelocityToFaces () |
| | Average velocities to faces.
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| virtual void | deallocate () |
| | Deallocate internal storage.
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| virtual void | setRealm (const std::string &a_realm) |
| | Set the realm for this solver.
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| virtual RefCountedPtr< CdrSpecies > & | getSpecies () noexcept |
| | Get the CDR species.
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| virtual const RefCountedPtr< CdrSpecies > & | getSpecies () const noexcept |
| | Get the CDR species. Const version.
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| virtual void | setSpecies (const RefCountedPtr< CdrSpecies > &a_species) |
| | Set species.
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| virtual void | setComputationalGeometry (const RefCountedPtr< ComputationalGeometry > &a_computationalGeometry) |
| | Set computational geometry.
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| virtual void | setAmr (const RefCountedPtr< AmrMesh > &a_amr) |
| | Set the amr object.
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| virtual void | setPhase (phase::which_phase a_phase) |
| | Set phase.
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| virtual void | setVerbosity (const int a_verbosity) |
| | Set verbosity.
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| virtual void | setTime (const int a_step, const Real a_time, const Real a_dt) |
| | Set the time for this solver.
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| virtual void | setVelocity (const EBAMRCellData &a_velocity) |
| | Set velocity from data holder.
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| virtual void | setVelocity (const RealVect &a_velocity) |
| | Set constant velocity.
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| virtual void | setVelocity (const std::function< RealVect(const RealVect a_pos)> &a_velocity) |
| | Set velocity using a polymorphic function.
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| virtual void | setDiffusionCoefficient (const EBAMRFluxData &a_diffusionCoefficient, const EBAMRIVData &a_ebDiffusionCoefficient) |
| | Data-based version of setting diffusion coefficients (which are stored on faces)
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| virtual void | setDiffusionCoefficient (const Real a_diffusionCoefficient) |
| | Set diffusion coefficient to be constant everywhere (they are stored on faces)
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| virtual void | setDiffusionCoefficient (const std::function< Real(const RealVect a_position)> &a_diffCo) |
| | Polymorphic way of setting diffusion coefficients every.
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| virtual void | setSource (const EBAMRCellData &a_source) |
| | Data based version of setting source terms.
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| virtual void | setSource (const Real a_source) |
| | Set constant source terms everywhere.
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| virtual void | setSource (const std::function< Real(const RealVect a_position)> &a_source) |
| | Polymorphic way of setting source terms.
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| virtual void | setEbFlux (const EBAMRIVData &a_ebFlux) |
| | Data-based version of setting the EB flux.
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| virtual void | setEbFlux (const Real a_ebFlux) |
| | Set the eb flux to a constant.
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| virtual void | initialData () |
| | Fill m_phi state with initial data from m_species.
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| virtual void | writePlotFile () |
| | Write plot file.
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| virtual void | writePlotData (LevelData< EBCellFAB > &a_output, int &a_icomp, const std::string &a_outputRealm, const int a_level) const noexcept |
| | Write output data to a_output.
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| virtual std::string | getRealm () const |
| | Get the realm where this solver is registered.
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| virtual std::string | getName () const |
| | Get solver name.
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| virtual Vector< std::string > | getPlotVariableNames () const |
| | Get output plot names.
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| virtual int | getNumberOfPlotVariables () const |
| | Get number of output fields.
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| virtual Real | computeDiffusionDt () |
| | Compute the largest possible diffusive time step (for explicit methods)
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| virtual Real | computeAdvectionDiffusionDt () |
| | Compute the largest possible diffusive time step (for explicit methods).
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| virtual Real | computeSourceDt (const Real a_max, const Real a_tolerance) |
| | Compute the largest possible source time step (for explicit methods.
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| virtual void | weightedUpwind (EBAMRCellData &a_weightedUpwindPhi, const int a_pow) |
| | Compute an upwind-weighted version of phi.
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| virtual Real | computeMass () |
| | Compute the "physical mass" in m_phi.
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| virtual Real | computeMass (const EBAMRCellData &a_phi, const bool a_kappaScale=true) |
| | Compute the "physical mass" in the input argument.
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| virtual Real | computeCharge () |
| | Compute the total charge in m_phi.
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| virtual bool | isDiffusive () |
| | Return true if the solver is diffusive and false otherwise.
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| virtual bool | isMobile () |
| | Return true if the solver is mobile and false otherwise.
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| virtual EBAMRCellData & | getPhi () |
| | Get the cell-centered phi.
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| virtual EBAMRCellData & | getSource () |
| | Get the source term.
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| virtual EBAMRCellData & | getCellCenteredVelocity () |
| | Get the cell-centered velocity.
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| virtual EBAMRFluxData & | getFaceCenteredVelocity () |
| | Get the face-centered velocities.
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| virtual EBAMRIVData & | getEbCenteredVelocity () |
| | Get the eb-centered velocities.
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| virtual EBAMRCellData & | getCellCenteredDiffusionCoefficient () |
| | Get the cell-centered diffusion coefficient.
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| virtual EBAMRFluxData & | getFaceCenteredDiffusionCoefficient () |
| | Get the face-centered diffusion coefficient.
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| virtual EBAMRIVData & | getEbCenteredDiffusionCoefficient () |
| | Get the EB-centered diffusion coefficient.
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| virtual EBAMRIVData & | getEbFlux () |
| | Get the eb flux data holder.
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| virtual EBAMRIFData & | getDomainFlux () |
| | Get the domain flux data holder.
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| virtual void | extrapolateAdvectiveFluxToEB () noexcept |
| | Extrapolate advective flux to EB.
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| virtual void | extrapolateAdvectiveFluxToEB (EBAMRIVData &a_ebFlux) const noexcept |
| | Extrapolate advective flux to EB.
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| virtual void | redistribute (EBAMRCellData &a_phi, const EBAMRIVData &a_delta) const noexcept |
| | Add data through redistribution into cell-centered holders.
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void | defineIterators () |
| | Build m_grownVofIter for all AMR levels.
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| virtual void | computeNormalSlopes (EBCellFAB &a_normalSlopes, const EBCellFAB &a_cellPhi, const Box &a_cellBox, const ProblemDomain &a_domain, const int a_level, const DataIndex &a_dit) |
| | Compute slopes.
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| virtual void | upwind (EBFluxFAB &a_facePhi, const EBCellFAB &a_normalSlopes, const EBCellFAB &a_cellPhi, const EBCellFAB &a_cellVel, const EBFluxFAB &a_faceVel, const ProblemDomain &a_domain, const Box &a_cellBox, const int &a_level, const DataIndex &a_dit, const Real &a_dt) |
| | Upwind/Riemann solve. This extrapolates the cell-centered data to the inside face centers and selects the upwind side.
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virtual void | parseSlopeLimiter () |
| | Parse slope limiting on/off.
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virtual void | setupDiffusionSolver () |
| | Set up diffusion solver.
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virtual void | setupHelmholtzFactory () |
| | Setup the operator factory.
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virtual void | setupMultigrid () |
| | Setup multigrid.
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| virtual void | setMultigridSolverCoefficients () |
| | Set the multigrid solver coefficients.
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| virtual void | resetAlphaAndBeta (const Real a_alpha, const Real a_beta) |
| | Reset alpha and beta-coefficients in the multigrid solvers.
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| virtual void | computeKappaLphi (EBAMRCellData &a_kappaLphi, const EBAMRCellData &a_phi) |
| | Compute kappa * L(phi) using the multigrid operator. This is different from computeDivD.
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virtual void | parseMultigridSettings () |
| | Parse solver settings for geometric multigrid.
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| virtual void | averageVelocityToFaces (EBAMRFluxData &a_faceVelocity, const EBAMRCellData &a_cellVelocity) |
| | Average cell-centered velocities to face centers.
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| virtual void | computeAdvectionFlux (EBAMRFluxData &a_flux, const EBAMRFluxData &a_facePhi, const EBAMRFluxData &a_faceVelocity, const bool a_addDomainFlux=true) |
| | Set up face-centered advection flux.
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| virtual void | computeAdvectionFlux (LevelData< EBFluxFAB > &a_flux, const LevelData< EBFluxFAB > &a_facePhi, const LevelData< EBFluxFAB > &a_faceVelocity, const int a_lvl) |
| | Set up face-centered advection flux on a grid level.
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| virtual void | computeDiffusionFlux (EBAMRFluxData &a_flux, const EBAMRCellData &a_phi, const bool a_addDomainFlux) |
| | Compute the face-centered diffusion flux.
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| virtual void | computeDiffusionFlux (LevelData< EBFluxFAB > &a_flux, const LevelData< EBCellFAB > &a_phi, const int a_lvl) |
| | Compute the face-centered diffusion flux.
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| virtual void | computeAdvectionDiffusionFlux (EBAMRFluxData &a_flux, const EBAMRCellData &a_cellStates, const EBAMRFluxData &a_faceStates, const EBAMRFluxData &a_faceVelocities, const EBAMRFluxData &a_faceDiffCo, const bool a_addDomainFlux) |
| | Compute the full advection-diffusion flux. This assumes that the solver is mobile and diffusive.
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| virtual void | resetDomainFlux (EBAMRFluxData &a_flux) |
| | Set flux to zero on domain boundaries.
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| virtual void | fillDomainFlux (EBAMRFluxData &a_flux) |
| | Set domain in data holder. This sets the flux on the boundary to either zero or to m_domainFlux.
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| virtual void | fillDomainFlux (LevelData< EBFluxFAB > &a_flux, const int a_level) |
| | Set domain in data holder. This sets the flux on the boundary to either zero or to m_domainFlux.
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| virtual void | conservativeDivergenceNoKappaDivision (EBAMRCellData &a_conservativeDivergence, EBAMRFluxData &a_flux, const EBAMRIVData &a_ebFlux) |
| | Compute conservative divergence from fluxes.
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| virtual void | nonConservativeDivergence (EBAMRIVData &a_nonConservativeDivergence, const EBAMRCellData &a_divG) |
| | Compute the non-conservative divergence.
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| virtual void | hybridDivergence (EBAMRCellData &a_hybridDivergence, EBAMRIVData &a_massDifference, const EBAMRIVData &a_nonConservativeDivergence) |
| | Use the non-conservative divergence to make the conservative divergence hold the hybrid divergence.
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| virtual void | hybridDivergence (LevelData< EBCellFAB > &a_hybridDivergence, LevelData< BaseIVFAB< Real > > &a_massDifference, const LevelData< BaseIVFAB< Real > > &a_nonConservativeDivergence, const int a_lvl) |
| | Make the hybrid divergence. On the way in, a_hybridDivergence must hold the conservative divergence.
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| virtual void | conservativeDivergenceRegular (LevelData< EBCellFAB > &a_divJ, const LevelData< EBFluxFAB > &a_flux, const int a_lvl) |
| | Compute the conservative divergence over regular cells.
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| virtual void | interpolateFluxToFaceCentroids (EBAMRFluxData &a_flux) |
| | Interpolate flux to centroids.
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| virtual void | interpolateFluxToFaceCentroids (LevelData< EBFluxFAB > &a_flux, const int a_lvl) |
| | Interpolate flux to centroids.
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| virtual void | computeDivergenceIrregular (LevelData< EBCellFAB > &a_divG, const LevelData< EBFluxFAB > &a_centroidFluxes, const LevelData< BaseIVFAB< Real > > &a_ebFlux, const int a_lvl) |
| | Compute conservative divergence on irregular cells (not kappa divided)
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| virtual void | initialDataDistribution () |
| | Fill initial data from a distribution function.
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| virtual void | initialDataParticles () |
| | Fill initial data from particles.
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| virtual void | defineInterpolationStencils () |
| | Define stencils for doing face-centered to face-centroid-centered states.
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virtual void | parseDomainBc () |
| | Parses domain BC options.
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virtual void | parsePlotVariables () |
| | Parses plot variables.
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virtual void | parsePlotMode () |
| | Parse plot mode.
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virtual void | parseDivergenceComputation () |
| | Parse the conservation.
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virtual void | parseRegridSlopes () |
| | Parse slope regrid.
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| virtual std::string | makeBcString (const int a_dir, const Side::LoHiSide a_side) const |
| | Shortcut for making a boundary condition string.
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| virtual void | fillGwn (EBAMRFluxData &a_noise, const Real a_sigma) |
| | Gaussian noise field.
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| virtual void | smoothHeavisideFaces (EBAMRFluxData &a_facePhi, const EBAMRCellData &a_cellPhi) |
| | Use Heaviside smoothing for computing face-centered states.
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| virtual void | writeData (LevelData< EBCellFAB > &a_output, int &a_comp, const EBAMRCellData &a_data, const std::string &a_outputRealm, const int a_level, const bool a_interpToCentroids, const bool a_interpGhost) const noexcept |
| | Write data to output. Convenience function.
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Vector< RefCountedPtr< LayoutData< VoFIterator > > > | m_grownVofIter |
| | Pre-built VoFIterators over grow(validBox,1) for the irregular kernel in computeNormalSlopes.
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Limiter | m_limiter |
| | If true, slopes are limited in the normal direction.
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bool | m_useCTU |
| | If true, the discretization uses CTU. Otherwise it's DCU (donor cell upwind)
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EBHelmholtzOp::Smoother | m_smoother |
| | Relaxation type for gmg.
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int | m_chebyOrder |
| | Chebyshev polynomial degree (only used when m_smoother is Smoother::Chebyshev)
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Real | m_chebyEigRatio |
| | Chebyshev eigenvalue ratio lambda_max/lambda_min (only used when m_smoother is Smoother::Chebyshev)
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int | m_rasInnerSweeps |
| | Number of inner frozen-ghost sweeps per restricted-additive-Schwarz iteration (only used when m_smoother is Smoother::RestrictedAdditiveSchwarz)
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MultigridType | m_multigridType |
| | GMG multigrid type.
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RefCountedPtr< AMRMultiGrid< LevelData< EBCellFAB > > > | m_multigridSolver |
| | Geometric multigrid solver.
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RefCountedPtr< EBHelmholtzOpFactory > | m_helmholtzOpFactory |
| | Operator factory.
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BiCGStabSolver< LevelData< EBCellFAB > > | m_bicgstab |
| | Conjugate gradient solver bottom MG level.
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EBSimpleSolver | m_simpleSolver |
| | Simple solver.
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GMRESSolver< LevelData< EBCellFAB > > | m_gmres |
| | GMRES solver.
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EllipticSolverChain::Settings | m_krylovSettings |
| | Outer-Krylov settings (selects gmg/gmres/bicgstab and the krylov_* parameters)
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EllipticSolverChain::FallbackPolicy | m_fallbackPolicy |
| | Fallback-chain latch policy (persists across regrids; re-probes GMG every krylov_retry_interval solves)
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EllipticSolverChain::KrylovSolver< EBCellFAB > | m_krylov |
| | Outer-Krylov driver (V-cycle-preconditioned BiCGStab/GMRES with persistent work vectors)
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bool | m_hasMultigridSolver |
| | Is multigrid solver defined or not?
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bool | m_multigridRefluxFree |
| | Use reflux-free AMR operator in GMG.
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EBAMRCellData | m_helmAcoef |
| | Storage for Helmholtz a-coefficient. Always 1.
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EBAMRCellData | m_residual |
| | Storage for multigrid residual.
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int | m_multigridVerbosity |
| | Verbosity for geometric multigrid.
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int | m_multigridPreSmooth |
| | Number of smoothings before averaging.
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int | m_multigridPostSmooth |
| | Number of smoothings before averaging.
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int | m_multigridBottomSmooth |
| | Number of smoothing before bottom solver.
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int | m_multigridMaxIterations |
| | Maximum number of iterations.
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int | m_multigridMinIterations |
| | Minimum number of iterations.
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BottomSolverType | m_bottomSolverType |
| | Bottom solver type.
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int | m_numSmoothingsForSimpleSolver |
| | Number of smoothing for bottom solver.
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int | m_minCellsBottom |
| | Set bottom drop depth.
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Real | m_multigridExitTolerance |
| | Multigrid tolerance.
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Real | m_multigridExitHang |
| | Multigrid hand.
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RefCountedPtr< CdrSpecies > | m_species |
| | Species through which e.g. mobility/diffusion and initial conditions is passed.
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RefCountedPtr< ComputationalGeometry > | m_computationalGeometry |
| | Computational geometry.
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RefCountedPtr< AmrMesh > | m_amr |
| | AMR; needed for grid stuff.
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Vector< RefCountedPtr< LayoutData< BaseIFFAB< FaceStencil > > > > | m_interpStencils [SpaceDim] |
| | Stencils for interpolating face-centered fluxes to face centroids.
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phase::which_phase | m_phase |
| | Phase.
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std::string | m_name |
| | Solver name.
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| std::string | m_className |
| | Class name.
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std::string | m_realm |
| | Realm where this solver is registered.
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CdrDomainBC | m_domainBC |
| | Domain BCs.
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EBAMRCellData | m_phi |
| | Cell-centered data (i.e. the advected-diffused quantity)
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EBAMRCellData | m_source |
| | Source term.
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| EBAMRCellData | m_cellVelocity |
| | Cell-centered velocities.
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| EBAMRFluxData | m_faceStates |
| | Holder for face centered states.
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| EBAMRFluxData | m_faceVelocity |
| | Face-centered velocities (only normal components)
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EBAMRIVData | m_nonConservativeDivG |
| | Scratch storage for the non-conservative divergence.
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EBAMRIVData | m_massDifference |
| | Scratch storage for the mass difference.
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EBAMRIVData | m_ebZero |
| | Scratch storage for the EB flux.
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EBAMRCellData | m_cachePhi |
| | Cached state vector for regrid.
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EBAMRCellData | m_cacheSource |
| | Cached source term for regrids.
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EBAMRIVData | m_ebVelocity |
| | EB-centered velocities.
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EBAMRIVData | m_ebFlux |
| | Flux through the embedded boundary.
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EBAMRIFData | m_domainFlux |
| | Domain flux.
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| EBAMRCellData | m_cellCenteredDiffusionCoefficient |
| | Diffusion coefficients on cell centers.
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| EBAMRFluxData | m_faceCenteredDiffusionCoefficient |
| | Diffusion coefficients on face centers.
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| EBAMRIVData | m_ebCenteredDiffusionCoefficient |
| | Diffusion coefficients on EB faces.
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| std::map< CdrDomainBC::DomainSide, CdrDomainBC::FluxFunction > | m_domainFluxFunctions |
| | Domain flux functions.
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| int | m_verbosity |
| | Solver verbosity.
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int | m_timeStep |
| | Time step.
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Real | m_time |
| | Current time.
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Real | m_dt |
| | Last time step increment.
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Redistribution | m_whichRedistribution |
| | Which type of redistribution to use.
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bool | m_blendConservation |
| | Flag for blending the hybrid divergence.
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bool | m_isDiffusive |
| | Is the solver diffusive or not.
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bool | m_isMobile |
| | Solve for advection/convection or not.
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bool | m_plotPhi |
| | If true, m_phi is added to plot files.
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bool | m_plotVelocity |
| | Output velocities.
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bool | m_plotDiffusionCoefficient |
| | Output diffusion coefficients.
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bool | m_plotEbFlux |
| | Output EB fluxes.
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bool | m_plotSource |
| | Output source term.
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bool | m_plotNumbers |
| | Plot numbers or densities.
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bool | m_regridSlopes |
| | Use slopes when regridding.
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int | m_seed |
| | RNG seed.
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Class that uses a slope limited method for advection, in combination with corner transport upwind (CTU).