Lightweight tagging class. Only tags cells based on electric field. More...
#include <CD_ItoPlasmaFieldTagger.H>
Inheritance diagram for Physics::ItoPlasma::ItoPlasmaFieldTagger:
Collaboration diagram for Physics::ItoPlasma::ItoPlasmaFieldTagger:
Public Member Functions | |
| ItoPlasmaFieldTagger () | |
| Weak constructor, must subsequently call define. | |
| ~ItoPlasmaFieldTagger () | |
| Destructor. | |
| void | computeTracers () |
| Compute tracer fields. | |
| virtual void | parseOptions ()=0 |
| Parse options. | |
| virtual void | parseRuntimeOptions ()=0 |
| Parse options. | |
 Public Member Functions inherited from Physics::ItoPlasma::ItoPlasmaTagger | |
| ItoPlasmaTagger () | |
| Weak constructor, must subsequently call define. | |
| ItoPlasmaTagger (const RefCountedPtr< ItoPlasmaPhysics > &a_physics, const RefCountedPtr< ItoPlasmaStepper > &a_timeStepper, const RefCountedPtr< AmrMesh > &a_amr, const RefCountedPtr< ComputationalGeometry > &a_computationalGeometry) | |
| Full constructor. | |
| virtual | ~ItoPlasmaTagger () |
| Destructor. | |
| virtual void | define (const RefCountedPtr< ItoPlasmaPhysics > &a_physics, const RefCountedPtr< ItoPlasmaStepper > &a_timeStepper, const RefCountedPtr< AmrMesh > &a_amr, const RefCountedPtr< ComputationalGeometry > &a_computationalGeometry) |
| Define function. More... | |
| virtual int | getNumberOfPlotVariables () |
| virtual void | regrid () |
| Regrid storage for tracer field. | |
| virtual bool | tagCells (EBAMRTags &a_tags) |
| Tag cells. | |
| virtual void | setPhase (const phase::which_phase a_phase) |
| Set phase. | |
| virtual Vector< EBAMRCellData > & | getTracerFields () |
| Tracer fields. | |
| virtual void | writePlotData (EBAMRCellData &a_output, Vector< std::string > &a_plotVariableNames, int &a_icomp) |
| Write plot data. | |
| Public Member Functions inherited from CellTagger | |
| CellTagger () | |
| Weak constructor (does nothing) | |
| virtual | ~CellTagger () |
| Destructor (does nothing). | |
| virtual int | getNumberOfPlotVariables () const |
| Get number of plot variables that will be written to file (by Driver). More... | |
| virtual void | writePlotData (EBAMRCellData &a_output, Vector< std::string > &a_plotVariableNames, int &a_icomp) const |
| Write plot data. More... | |
| virtual int | getBuffer () const |
| Get tag buffer. More... | |
Protected Member Functions | |
| void | allocateStorage () |
| Allocate memory. | |
| void | deallocateStorage () |
| Deallocate memory. | |
| void | computeElectricField (EBAMRCellData &a_E, EBAMRCellData &a_grad_E) |
| Compute electric field. | |
| virtual Vector< Real > | tracer (const RealVect a_pos, const Real a_time, const Real a_dx, const RealVect a_E, const Real a_min_E, const Real a_max_E, const RealVect a_grad_E, const Real a_min_grad_E, const Real a_max_grad_E)=0 |
| Compute tracer field. | |
| virtual bool | coarsenCell (const RealVect a_pos, const Real a_time, const Real a_dx, const int a_lvl, const Vector< Real > a_tracer, const Vector< RealVect > a_grad_tracer)=0 |
| Coarsen a cell based on a tracer field. | |
| virtual bool | refineCell (const RealVect a_pos, const Real a_time, const Real a_dx, const int a_lvl, const Vector< Real > a_tracer, const Vector< RealVect > a_grad_tracer)=0 |
| Refine a cell based on a tracer field. | |
| Protected Member Functions inherited from Physics::ItoPlasma::ItoPlasmaTagger | |
| virtual void | refineCellsBox (DenseIntVectSet &a_refined_tags, const Vector< EBCellFAB * > &a_tracers, const Vector< EBCellFAB * > &a_grad_tracers, const int a_lvl, const Box a_box, const EBISBox &a_ebisbox, const Real a_time, const Real a_dx, const RealVect a_origin) |
| Per-box refinement tags. | |
| virtual void | coarsenCellsBox (DenseIntVectSet &a_refined_tags, const Vector< EBCellFAB * > &a_tracers, const Vector< EBCellFAB * > &a_grad_tracers, const int a_lvl, const Box a_box, const EBISBox &a_ebisbox, const Real a_time, const Real a_dx, const RealVect a_origin) |
| Per-box coarsen. | |
| Protected Member Functions inherited from CellTagger | |
| bool | insideTagBox (const RealVect a_pos) const |
| Check if a point is inside a tagging box. More... | |
| int | getManualRefinementLevel (const RealVect a_pos) const |
| Get the specified level for this position when doing manual refinement. | |
| virtual void | parseTagBoxes () |
| Parse boxes. More... | |
| virtual void | parseRefinementBoxes () |
| Parse refinement boxes. | |
| virtual void | parseBuffer () |
| Parse refinement buffer. More... | |
| virtual void | parseVerbosity () |
| Parse the verbosity from the input file or command line. More... | |
Protected Attributes | |
| EBAMRCellData | m_scratch |
| Scratch storage. | |
| EBAMRCellData | m_E |
| Storage for electric field. | |
| EBAMRCellData | m_grad_E |
| Storage for electric field. | |
| Protected Attributes inherited from Physics::ItoPlasma::ItoPlasmaTagger | |
| std::string | m_realm |
| Realm. | |
| phase::which_phase | m_phase |
| Phase. | |
| RefCountedPtr< ItoPlasmaPhysics > | m_physics |
| Plasma kinetics. | |
| RefCountedPtr< ItoPlasmaStepper > | m_timeStepper |
| Time stepper. | |
| RefCountedPtr< AmrMesh > | m_amr |
| AmrMesh. Needed for computing tracer stuff. | |
| RefCountedPtr< ComputationalGeometry > | m_computationalGeometry |
| Computational geometry. Needed for what exactly? | |
| int | m_num_tracers |
| Number of tracer fields. | |
| Vector< EBAMRCellData > | m_tracer |
| Tracer fields. | |
| Vector< EBAMRCellData > | m_grad_tracer |
| Gradient of tracer fields. | |
| Protected Attributes inherited from CellTagger | |
| std::string | m_name |
| Cell tagger class name (default is CellTagger). | |
| int | m_verbosity |
| Class verbosity. | |
| int | m_buffer |
| Tag buffer. Grow tags by this amount (finest level only) | |
| Vector< RealBox > | m_tagBoxes |
| Boxes that can be used to restrict tagging. | |
| std::vector< std::pair< RealBox, int > > | m_refBoxes |
| Refinement boxes for adding manual refinement. | |
Detailed Description
Lightweight tagging class. Only tags cells based on electric field.
This class fetches the point-wise electric field. The class is pure, so users must implement the actual tagging criterion themselves.
The documentation for this class was generated from the following files:
- Physics/ItoPlasma/CD_ItoPlasmaFieldTagger.H
- Physics/ItoPlasma/CD_ItoPlasmaFieldTagger.cpp
